Sequence
atgc intronic sequence ATGC exonic sequenceGTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttatttattaatagcttttgtccaggcatgaactgtgcttttagtc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 6
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgt-tctttctttctgc-ctttactgcagaatgtc---aattcttgtacttggtcttgtcttatttattaatagcttttgtccaggcatg-aactgtgcttttagtc
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GTCAATCCTTCAGATGTAATTATTTTGGAAGGTATTCTGGTTTTCCATGATTCACGTGTCCGGGACTTGATGAACATGAAGATATTTGTTGATACAGgtatcaatgtttgcacaccaaactgatgataatctcaaactcttgcccatgaccagcaaccatcagttg-tacttgtggtcagtgtgtttaattgtttatt-----
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g17320.1 (Oryza sativa), 5'ss of exon 6
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttatttattaatagcttt-tgtccaggcatgaactgtgcttttagtc
||||| ||||||||||| || ||||||||||| || || |||| |||||| ||||||||||| ||||||||||||||||| |||||||| |||||| || | | | | ||| | |||| | || | | | || | || | | || | || | | || |
GTCAATCCTTCAGATGTAATTATTTTGGAAGGAATTCTGGTTTTCCATGATTCACGTGTCCGGGATTTGATGAACATGAAGATCTTTGTTGACACAGgtatcaatatttgcatgccaaactgtcttattatctctagctcttgcccatgacc-agtaatcatcagttgtacgtgtggtcagtatgattatttccatat
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 6
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttatttattaatagcttttgtccaggcatgaactgtgcttttagtc---
|| || ||||||||||| || ||||||||||| || || ||||||||||| || || |||| ||||||||||||||||| || |||||||||||| | || | | | | |||| ||||| | | |||| || | | || || | | ||| | | || || | |
GTTAATCCTTCAGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATCTTCGTTGATACAGgtacaaatatttgcttataagttgatgatgtt--ttcttctgtctc-ccttgcctgttgatattccagaagttcccaatgcacaagcattgattcctgactat
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G169462_T01 (Zea mays), 5'ss of exon 5
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttattt-attaatagcttttgtccaggcat-gaactgtgcttttagtc
|| || ||||| ||||| || ||||||||||| || || ||||||||||| || || |||| ||||||||||||||||| || |||||||||||| | || ||| | || | | | | | | | || |||| | | | | || || |||| || | | || |
GTTAATCCTTCGGATGTTATTATTTTGGAAGGAATTCTAGTTTTTCATGATTCACGCCTCAGGGATTTGATGAACATGAAGATTTTCGTTGATACAGgtaccaatatt-tgcttataagttgatgttttcttctgtctctcttgcctgtcgatattccagaagttcccaatgcacaagcattgattcccgactatatt-
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G45270.1 (Glycine max), 5'ss of exon 6
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttatttattaatagcttttgtccaggcatgaactgtgcttttagtc---
|| |||||||||||||| ||||||||||||||||| || |||| ||||| | ||||| ||||| |||||||| ||||||||||||||||| |||||| |||| || || ||| | | | ||| || | || | | | | || | | | | ||||| | | | || ||
GTGAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCATGACCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGgtcctttattattgtttttccatctttaattcagaatttattttt---ttattgtaaattttcagttgtatttgttagtttgtaagggatatggttcatcttt
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA18G08180.1 (Glycine max), 5'ss of exon 6
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctt--------tctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttatttattaatagcttttgtccaggcatgaactgtgcttttagtc
| |||||||||||||| |||||||| |||||||| || |||| ||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||| |||| || || ||||| |||||| | | || ||||| | | |||| ||||| ||||| || | || | ||||||
-TGAACCCTTCAGATGTTATAATTTTAGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGGtcctttattattgttattccatctttaactcagaat-ttatttattgtaagtt-tgttgttgtatttgttaat-----ttataagggaaatggtccatcttttatct
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 6
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttatttattaatagcttttgt--ccaggcatgaa-ctgtgcttttagtc---
|| ||||| | ||||| || ||||||||||| || || |||||||||||| || || || | ||||||||| ||||||||||||||||| |||||| | || || | || | || || || | | || | | | ||||| | | || ||| | | | | ||| | |||| | | ||
GTAAACCCAGCGGATGTTATTATTTTGGAAGGTATCCTTGTTTTTCATGATCCACGAGTGCGAGCATTGATGAATATGAAGATATTTGTTGACACAGgtcccttattatt---ttagttccaatat---aacttctataacttactgtattatatttttctgtggcatttcttactatgtatggatctgttgtcaaactcatt
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttcttt-------ctgcctttactgcagaatgtcaattctt-gtacttg-gtcttgtcttatttattaatagcttttgtccaggca-tgaactgtgcttttagtc------------------------
|| || ||||| || || |||||| ||||||| ||||||||||| ||||| | ||| || || || ||||||||||||||||||||||| || ||||| || | | ||| ||| | | ||| | | | | | | | | || | || | | | ||| | | || || ||| |
GTGAATCCTTCTGACGTTATAATTCTGGAAGGTATACTCATTTTCCATGACCCTCGGGTGCGAGATTTGATGAACATGAAGATATTTGTAGACGCAGgtctttcccataccaaacctgttaacacttatgtagtcaaatccgtagcatatatgagacgctgcacttgtatat-gtactcatgaaggtaacacattggtctcttattttacatcatggcgttatctatgcag
upper sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S83_234V6.2 (Physcomitrella patens), 5'ss of exon 6
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgt-caattcttgtacttggtcttgtcttatttattaatagcttttgtc-----caggcatgaactgtgcttttagtc-----------------------------------------------------------------------------------
||||| | || ||||| || ||| |||| || ||| | || ||||||||| |||||| ||||| | ||||| |||||||| ||||||||||||||| | | |||| | | | ||||| || ||| | | || | | ||||| | | |||| | || |
GTCAATGCATCTGATGTAATTATTGTGGAGGGAATATTGATCTTTCATGATGCTCGTGTTCGGGAGTACATGAATATGAAGATCTTTGTTGATACAGgtcagcattgagaatcattacccagttttatatagctcttggtctcattctaatgtgtgtttgaggtcacctttgttagtttcttgaatgagttagatattctgcacctactgcacaacccgttatgagttggctcttgaagccagagacgtgtcggctcggacactcatcttgaacagtgcagtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718287|gb|FC066969.1|FC066969EST: TGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAG ATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGG
genomic: TGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctt ... ttcagtgcagATGCTGATGTACGGCTGGCAAGGAGAATTAGGCGTGATACAGTTGAGAAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAACCCTTCAGATGTGATAATTTTGGAAGGCATACTCATTTTTCATGATCTTCGTGTCCGGGAATTGATGAACATGAAGATATTTGTTGATACAGgttctttctttctgcctttactgcagaatgtcaattcttgtacttggtcttgtcttatttattaatagcttttgtccaggcatgaactgtgcttttagtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA