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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaataggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcag

Basic information

species Vitis vinifera
transcript Vv19s0014g03920.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G22240.1 (Glycine max), 5'ss of exon 6
AGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaa--taggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcag
| ||||| |||||||||||||| ||||| |||||||||||||||||||| || ||| | ||||||||||| ||||||||| | |||||| |||||||||||||   | ||||| |   || ||     ||  | |||    | | |  ||||    || |||     ||  ||   |      |                                                                                                
AAAATACGAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagagttggtccctactattttct---gcttattataa--aatacaagtttgacacttctgtatttcattttgttttcttccag-----------------------------------------------------------------------------------------------

upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G39770.1 (Glycine max), 5'ss of exon 6
AGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaa--taggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcag
| ||||| |||||||||||||| ||||| |||||||||||||||||||| || ||| | ||||||||||| ||||||||| | |||||| |||||||||||||   | ||||| |   |  ||||||  |  | |||    | | || ||||    ||| ||     ||  || | |  |    |                                                                                               
ACAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagatttggtccctacta-attgctg--cttattataa--aatactagtttgacactcttgtatttca--tttgttttcttccag----------------------------------------------------------------------------------------------

upper sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 5'ss of exon 6
AGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaataggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcag
| ||||| ||||||||||||||||| || ||||| |||||| ||||| | |  ||| | ||||||||||| ||||| ||||||||||||||||| |||||||| |   |  | |  |  |||   ||       || || ||  |  | ||||   ||     |    |||   | || ||                                                                                                 
AAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGgtactc--taatggaaaaattgtcagggatttcgtt-tccttgttgatgtcttatgcccatttcttttctt---ttgccag-------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719286|gb|FC068262.1|FC068262
EST:     GAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAG                         TTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCA
genomic: GAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaataggtc ... tttcttgcagTTGTTACTTGGCATCAACCATGCAAGTTGTGTTCTCAACACAGTCCTTCCA