Sequence
atgc intronic sequence ATGC exonic sequenceTTTATTGGAAATGTGCATGGAGATGAACCTGTTGGTCGTGAGCTTCTGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTGgtatttttcttttcttgtactattattctttaatgatattggagattagttgtttgcatttacagaaaccttttaaagttccaggtgtattgattccttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os06g05240.1 (Oryza sativa), 5'ss of exon 6
TTTATTGGAAATGTGCATGGAGATGAACCTGTTGGTCGTGAGCTTCTGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTGgtatttttcttttcttgtactattattctttaatgatattggagattagttgtttgcatttacaga--aaccttttaaagttccaggtgtattgattcc-ttg----------------------------------------------------
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TATGTTGGTAATGTCCATGGTGATGAACCTGTTGGAAGGGAGGTTCTTATAAAGCTTGCAAATTGGCTGTGTGATAACTATTTGAAGGATCCCTTGgtaagcaagatt-ctcacattgttatctgctcttaaattcgatgtttgtctggct-caactatggttttacgcaatatatttccatctgttttactgaaattgatagaaatatatggtaagctcaaaaacttaccagttaaactaatatctgtag
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G31000.1 (Glycine max), 5'ss of exon 6
TTTATTGGAAATGTGCATGGAGATGAACCTGTTGGTCGTGAGCTTCTGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTGgtatttttcttttct-----tgtactattattctttaatgatattggagattagttgtttgcatttacagaaaccttttaaagttccaggtgtattgattccttg
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TTTATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATATTTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTGgtatttttctttcctttatttgcacagatatattctggtctctttccctgtct-ttgcatacatg-acaaatacgtgcctttgctgttatttagctgatgct---
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G36590.1 (Glycine max), 5'ss of exon 6
TTTATTGGAAATGTGCATGGAGATGAACCTGTTGGTCGTGAGCTTCTGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTGgtatttttcttttct-----tgtactattattctttaatgatattggagattagttgtttgcatttacagaaaccttttaaagttccaggtgtattgattccttg
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TATATTGGAAATGTGCACGGTGATGAACCTGTGGGACGTGAGCTGCTTATATTTTTGGCCAATTGGTTATGTGATAACCATTTGAAGGATCCTTTGgtatttttgtttcctttatttgcacctatatattttgatctctttccccgtct-ttgcatacatg-acaaatacatgcctttgctgttattttgttgatgcc---
upper sequence: Vv18s0157g00050.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G71696.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTATTGGAAATGTGCATGGAGATGAACCTGTTGGTCGTGAGCTTCTGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTGgtat----ttttcttttcttgtactattattctttaatgatattggagattagttgtttgcatttacagaaaccttttaaagttccaggt---------gtattgattccttg--------------
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TACATTGGGAATGTACATGGAGATGAACCTGTAGGGCGTGAGCTCTTATTACGCCTTGCAAACTGGATTTGTGATAACTATAAGAAGGATCCATTGgtaagtgatttttgctttttgtaattgcaccatgccatggccatgaaagttgttcactcatcttca-ataaacttgcctaagaaaaaggttatgtgcagatactgatttttttatgctggtatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161718235|gb|FC066954.1|FC066954EST: TGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTG GCAACATTGATCATTGAAAATGTTCACCTGCATATACTTCCTTCCATGAAT
genomic: TGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTGgtatttttct ... gtccttacagGCAACATTGATCATTGAAAATGTTCACCTGCATATACTTCCTTCCATGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTATTGGAAATGTGCATGGAGATGAACCTGTTGGTCGTGAGCTTCTGTTACTCCTTGCAAATTGGTTATGTGATAACCATATGAAGGATCCCTTGgtatttttcttttcttgtactattattctttaatgatattggagattagttgtttgcatttacagaaaccttttaaagttccaggtgtattgattccttg
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