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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatgaagctctatcttacatggatggatggcctcttgttttttctttcttttcttcatttttttggctatggtttcctatagatatgatcttct...

Basic information

species Vitis vinifera
transcript Vv18s0001g06900.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g06900.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G086971_T01 (Zea mays), 5'ss of exon 6
GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatga--agctctatcttacatggatggatggcctcttgttttttctttcttttcttcatttttttggctatggtttcctatagatatgatcttct
||| ||  ||||| ||||| | |  |||||||||||||||||||||||||||||||  |||  || ||| | |    |||| ||||     |  | ||| |   |  | |  |  |||  |   |  |    | | ||     |||   || 
GTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTGgtaagttctgattagttct-tttggtttggagggatccaagcacgctttgttcattctgttctggtttgctatccgctaaagttcgatgacactgagtctc-

upper sequence: Vv18s0001g06900.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G086971_T02 (Zea mays), 5'ss of exon 5
--------------------------------------------------GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatga--agctctatcttacatggatggatggcctcttgttttttctttcttttcttcatttttttggctatggtttcctatagatatgatcttct
                                                  ||| ||  ||||| ||||| | |  |||||||||||||||||||||||||||||||  |||  || ||| | |    |||| ||||     |  | ||| |   |  | |  |  |||  |   |  |    | | ||     |||   || 
CCTTCTGATGCATTGCTTACTATCACTGAACTGTAGTGTCTGTACGGCAGGTTTCCACTCCTTGTTGACGCCAGTACTGGTATCTCAATGTATGAAAGTGgtaagttctgattagttct-tttggtttggagggatccaagcacgctttgttcattctgttctggtttgctatccgctaaagttcgatgacactgagtctc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384554|gb|EC948998.1|EC948998
EST:     GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG                         GTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
genomic: GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatg ... tttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
EST: gi|110396178|gb|EC961859.1|EC961859
EST:     TTCCCTTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG                         GTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
genomic: TTCCC-TTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatg ... tttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
EST: gi|22013797|gb|BQ798831.1|BQ798831
EST:     GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTG                         GTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT
genomic: GTTCCCTTTCCTTATTGACCCAAACACTGGTATCTCAATGTATGAAAGTGgtaagtgatg ... tttttaatagGTGAAATTGTGAAGTACCTATTTCAGCAATATGGTAAAGGAAAAAGTCCCT