Sequence
atgc intronic sequence ATGC exonic sequenceGTGAAGAGCTTTCAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGgtatacaactaggtctgcttattttcttgtcatttgagagagtcctgttgctgttactcctatttagttttaacaaatctttgctttctctttttcatgaaagctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os05g48620.1 (Oryza sativa), 5'ss of exon 6
GTGAAGAGCTTTCAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGgtatacaactaggtctgcttattttcttgtcatttgagagagtcctgttgctgttactcctatttagttttaacaaatctttgctttctctttttcatgaaagctag
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GTGAAGAGCTATCAAAAAAACAAGCTGCTCAAGAAGCTACTATGCGGAAACTTAGGGCACAGgcatggactgcaactcttatcattaagcatattttgtgcaaat----taaatattttaccaatttcactttcttccat-tttgttttctttcag-------------
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G43330.1 (Glycine max), 5'ss of exon 9
GTGAAGAGCTTTCAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGgtatacaactaggtctgcttattttcttgtcatttgagagagtcctgttgctgttactcctatttagttttaacaaatcttt--gctttctctttttcatgaaagctag
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GTGAAGAGCTTTCCAAAAAACAGGCTGCTCAAGAATCCACAATTAGGAAACTAAGGGCTCAGgtatgcagactatttgttgtattttcctgctatcttcaa----cctttt----caacccctacata-ttgtaataaatctcttgattactttttttttatgaaagctag
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G01980.1 (Glycine max), 5'ss of exon 7
GTGAAGAGCTTTCAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGgtatacaactaggtctgcttattttcttgtcatttgagagagtcctgttgctgttactcctatttagttttaacaaatctttgctttctctttttcatgaaagctag
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GTGAAGAGCTTTCCAAAAAACAGGCTGCTCAAGAATCCACAATTAGGAAACTAAGGGCTCAGgtatgcagactatttgttgtattttcctgccatcttcaa----cctttt----ctacacctacata-ttgtaataaatctcaattactttttttttatgaaagctag
upper sequence: Vv16s0098g00540.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT1G79830.3 (Arabidopsis thaliana), 5'ss of exon 7
GTGAAGAGCTTTCAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGgtatacaactaggtctgcttattttcttgtcatttgagagagtcctgttgctgttactcctatttagttttaacaaatctttgctttctctttttcatgaaagctag
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GCGAAGAGCTTTCAAAGAAACAGGCTGCTCAAGAAGCTCAGATCAGGAAGCTAAGGGCTCAGgtatatattcaacgctatgtgtttcatttttatcaataccaacagtctcatggcaattcttatttgt-----acgagggttag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34544079|gb|CF512311.1|CF512311EST: CAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAG ATTAGAGAGTT
genomic: CAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGgtatacaact ... tgaaagctagATTAGAGAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAAGAGCTTTCAAAAAAGCAAGCTGCTCAAGAGTCTCAGATTAGGAAATTAAGGGCACAGgtatacaactaggtctgcttattttcttgtcatttgagagagtcctgttgctgttactcctatttagttttaacaaatctttgctttctctttttcatgaaagctag
- - - - - - - - AAGCAA
- - - - - - - - - AGCAAG
- - - - - - - - - - CAAGCT
- - - - - - - - - - AAGCTG
- - - - - - - - - - - AGCTGC
- - - - - - - - - - - GCTGCT