1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGCGAGCCATTCTCAACATACCCTCGGACTTATGATCTCATCCATGTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactctttaaatttatgatctcattctccataacttatttctaacctgtttcttgatttcttagcatttgtttggatttttagtgtagtgtggcaatat...
species | Vitis vinifera |
transcript | Vv15s0048g01990.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAG GTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGAEST: gi|30300158|gb|CB976952.1|CB976952
genomic: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactcttta ... tcacttgcagGTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGA
EST: GTAACTAGTATCGAATCATTGATAAAAATTTTAGGTTCTGGCAAGAACAG GTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGAEST: gi|29783073|gb|CB348973.2|CB348973
genomic: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactcttta ... tcacttgcagGTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGA
EST: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAG GTGTAACCTTGTGGATTTGATGGTGAAAATGGATCGAATATTGCGTCCAGEST: gi|110425458|gb|EC991843.1|EC991843
genomic: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactcttta ... tcacttgcagGTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAG
EST: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAG GTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGAEST: gi|34544982|gb|CF513214.1|CF513214
genomic: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactcttta ... tcacttgcagGTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGA
EST: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAG GTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGAEST: gi|30300088|gb|CB976882.1|CB976882
genomic: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactcttta ... tcacttgcagGTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGA
EST: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAG GTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGAEST: gi|34545974|gb|CF514206.1|CF514206
genomic: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactcttta ... tcacttgcagGTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGA
EST: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAG GTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGA
genomic: GTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactcttta ... tcacttgcagGTGTAACCTTGTGGATTTGATGGTGGAAATGGATCGAATATTGCGTCCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCGAGCCATTCTCAACATACCCTCGGACTTATGATCTCATCCATGTAACTAGTATCGAATCATTGATAAAAATTCTAGGTTCTGGCAAGAACAGgtactctttaaatttatgatctcattctccataacttatttctaacctgtttcttgatttcttagcatttgtttggatttttagtgtagtgtggcaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC