1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATATCAAAGAACTCATCTGGAGGGAATCCGTAAAATTCAATCCAGACCCACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatggctatgatttccaagaatgctatatatgaaaccatcataatctccctagaaaaaaaaatggtgaatcatgctttggagatagtgggattttacttagaacatgtcctcataagatctctcacacttaatttctcttctttcag
species | Vitis vinifera |
transcript | Vv15s0046g02010.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAEST: gi|110397781|gb|EC963671.1|EC963671
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAEST: gi|352764716|gb|FQ471776.1|FQ471776
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAEST: gi|110381451|gb|EC934491.1|EC934491
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAEST: gi|30329963|gb|CD013225.1|CD013225
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAEST: gi|34363711|gb|CF405296.1|CF405296
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAEST: gi|110399790|gb|EC966316.1|EC966316
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCAEST: gi|26258173|gb|CA809236.1|CA809236
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
EST: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAG TGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
genomic: ACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatg ... cttctttcagTGCTCGTAATATTCAAAGGCTGATGAAGAAGCTGAGGCAGAACCATTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATCAAAGAACTCATCTGGAGGGAATCCGTAAAATTCAATCCAGACCCACCAGTTCATTGAGAAGTATGTGATCATGTTGTTGTAAACACTAGAAAAGgtaggccatggctatgatttccaagaatgctatatatgaaaccatcataatctccctagaaaaaaaaatggtgaatcatgctttggagatagtgggattttacttagaacatgtcctcataagatctctcacacttaatttctcttctttcag
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