1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATCTGAAGGGGATTGGGTTTGCCCCAAATGCGACAATGTTAACTTTGCTTTTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCTgtaagtccttcctcatccattataattttgtcttgcaagcattgctgcaatggtctgatgttcgccttgaatactttctcgtag
species | Vitis vinifera |
transcript | Vv15s0021g01650.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCT GGACCAAGCCGGTCAGATTCTGGTGCCCCAGAAGGTAGCTGGACTTGTAGCEST: gi|110412354|gb|EC978101.1|EC978101
genomic: --AGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCTgtaagtcctt ... tttctcgtagGGACCAAGCCGGTCAGATTCTGGTGCCCCAGAAGGTAGCTGGACTTGTAGC
EST: TTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCT GGACCAAGCCGGTCAGATTCTGGTGCCCCAGAAGGTAGCTGGACTTGTAGCEST: gi|110721133|gb|EE097779.1|EE097779
genomic: TTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCTgtaagtcctt ... tttctcgtagGGACCAAGCCGGTCAGATTCTGGTGCCCCAGAAGGTAGCTGGACTTGTAGC
EST: TTAAAACCACTTGCCACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCT GGACCAAACCGGTCAGATTCTGGTGCCCCAAAAGG-AGCTGGACTTGGAACEST: gi|26263220|gb|CA814283.1|CA814283
genomic: TTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCTgtaagtcctt ... tttctcgtagGGACCAAGCCGGTCAGATTCTGGTGCCCCAGAAGGTAGCTGGACTTGTAGC
EST: TTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCT GGACCAAGCCGGTCAGATTCTGGTGCCCCAGAAGGTAGCTGGACTTGTAGCEST: gi|77587773|gb|DV223079.1|DV223079
genomic: TTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCTgtaagtcctt ... tttctcgtagGGACCAAGCCGGTCAGATTCTGGTGCCCCAGAAGGTAGCTGGACTTGTAGC
EST: TTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCT GGACCAAGCCGGTCAGATTCTGGT
genomic: TTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCTgtaagtcctt ... tttctcgtagGGACCAAGCCGGTCAGATTCTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGAAGGGGATTGGGTTTGCCCCAAATGCGACAATGTTAACTTTGCTTTTAGAACCACTTGCAACATGAAGAAATGTGGAGCCGCTAGGCCTTCTTCTgtaagtccttcctcatccattataattttgtcttgcaagcattgctgcaatggtctgatgttcgccttgaatactttctcgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG