1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AATGACAATTCCTGAGATTCGTCAGCACCCATGGTTCCAAGCTCATCTTCCTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGgtttggtgataatttgattgcttatttgttttccatcaatgcttgcaaactggctttatgcctgcatggaatagtttggactatcttaacaacttaaaca...
species | Vitis vinifera |
transcript | Vv14s0108g01230.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAG ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATEST: gi|294964467|gb|GW838270.1|GW838270
genomic: CTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGgtttggtgat ... cctcatgcagATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAAT
EST: CTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAG ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATEST: gi|161720814|gb|FC070953.1|FC070953
genomic: CTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGgtttggtgat ... cctcatgcagATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAAT
EST: CTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAG ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATEST: gi|110379945|gb|EC945172.1|EC945172
genomic: CTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGgtttggtgat ... cctcatgcagATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAAT
EST: CTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAG ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAAT
genomic: CTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGgtttggtgat ... cctcatgcagATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGACAATTCCTGAGATTCGTCAGCACCCATGGTTCCAAGCTCATCTTCCTCGCTATTTGGCTGTACCCCCACCTGACACAATTCAACAAGCAAAAAAGgtttggtgataatttgattgcttatttgttttccatcaatgcttgcaaactggctttatgcctgcatggaatagtttggactatcttaacaacttaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaatag