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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCCTTATGATGAAGCTGCCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtgttcatgttttgcttcatgttcagatagaactatttcatcgtccagattgaatcttgagtttcaatgccatgaattagagcacttatattt...

Basic information

species Vitis vinifera
transcript Vv13s0067g02950.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351034809|gb|FQ458166.1|FQ458166
EST:     CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAG                         GTGCACTTTGTTCTCTTCTCGGATGACATTTATAATGTTTGGTTGAATAAG
genomic: CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtg ... atatttgcagGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGTTGAATAAG
EST: gi|71876452|gb|DT025507.1|DT025507
EST:     CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAG                         GTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTT
genomic: CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtg ... atatttgcagGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTT
EST: gi|351014566|gb|FQ437568.1|FQ437568
EST:     CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAG                         GTGCACTTTGTTCTCTTCTCGGATGAAATTTATAATGTTTGGTTGAATAAG
genomic: CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtg ... atatttgcagGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGTTGAATAAG
EST: gi|349812975|gb|FQ411215.1|FQ411215
EST:     CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAG                         GTGCACTTTGTTCTCTTCTCGGATGACATTTAAAATGTTTGGT
genomic: CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtg ... atatttgcagGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGT
EST: gi|34550530|gb|CF518748.1|CF518748
EST:     CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAG                         GTGCACTTTGTTCTCTTCTCGGATGACATCTAGATTGTTTGGTTGAATAAG
genomic: CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtg ... atatttgcagGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGTTGAATAAG
EST: gi|110690444|gb|EE067550.1|EE067550
EST:     CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAG                         GTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGTTGAATAAG
genomic: CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtg ... atatttgcagGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGTTGAATAAG
EST: gi|351014429|gb|FQ437431.1|FQ437431
EST:     CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAG                         GTGCACTTTGTTCTCTTCTCGGATGACATTTATAATGTTTGGTTGAATAAG
genomic: CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtg ... atatttgcagGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGTTGAATAAG
EST: gi|349815351|gb|FQ400506.1|FQ400506
EST:     CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAG                         GTGCACTTTGTTCTCTTCTCGGATGACATTTATAATGTTTGGTTGAATAAG
genomic: CCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtg ... atatttgcagGTGCACTTTGTTCTCTTCTCGGATGACATCTATAATGTTTGGTTGAATAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATATCCTTATGATGAAGCTGCCACAGTGGCTATATCCACTGTCAAAGAGTTTGGGAAAGACTTAAAAGAGgtatctggtgttcatgttttgcttcatgttcagatagaactatttcatcgtccagattgaatcttgagtttcaatgccatgaattagagcacttatattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatagaa