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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTATGATGGGGACCTTGAAGCTGCAAGATCTTACTATTCCCAATCTTTGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaactgctttcacaatgtgtgcttattgatttgcatatttgatatgaactgttattttcatataccatgtgatgtttgatttgaatctaaagatt...

Basic information

species Vitis vinifera
transcript Vv13s0047g00170.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0047g00170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G47010.1 (Glycine max), 5'ss of exon 6
ATATTATGATGGGGACCTTGAAGCTGCAAGATCTTACTATTCCCAATCTTTGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaactgctttcacaatgtgtgcttattga--tttgcatatttgatatgaactgttattttcatat-accatgtgatgtttgatttgaatctaaagatt
|||||||||||  |||||| |||||||||||||||||||||   |||||||| ||||||| ||| |||   ||||  |   ||||||||||||||| |||||| |  | | || ||   ||   |     ||||  |||      ||||| |  | | | || |||||   |   | |    ||||  |||   |  ||| ||
ATATTATGATGAAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGAATGTTCGGCGCGATGTTGTCAAACACAATTCAAATGTTCCATCCCAGgttggttattactatctacatacatttgatttgaattttttgatgttgatgtttaat-tgatcttcatgcgagtctttctcttttggcttggtgc--aagctt

upper sequence: Vv13s0047g00170.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA04G15130.1 (Glycine max), 5'ss of exon 6
ATATTATGATGGGGACCTTGAAGCTGCAAGATCTTACTATTCCCAATCTTTGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaactgctttcacaatgtgtgcttattgatttgcatatttgatatgaactgtt--attttcatataccatgtgatgtttgatttgaatctaaagatt--
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ATATTACGATGGAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGAATGTTCGACGTGATGCTGTCAAGCACAATTCAAACGTTCCATCCCAGgttggttattactatt----tgcatacatttgattttaaatttttgttgttacctaattgaccttcatgcaagtcttgctcttttggcttggtgcaagctttac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30132145|gb|CB917484.1|CB917484
EST:     NGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|351047067|gb|FQ454677.1|FQ454677
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCCAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|28964625|gb|CB343658.1|CB343658
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|29782979|gb|CB348769.2|CB348769
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|352774116|gb|FQ474639.1|FQ474639
EST:     GCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: GCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|351038304|gb|FQ460996.1|FQ460996
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAA-GTTGCTGATGTGAAAAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|110362765|gb|EC926319.1|EC926319
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|110386747|gb|EC951369.1|EC951369
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|71866068|gb|DT015123.1|DT015123
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|351055326|gb|FQ441924.1|FQ441924
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|32457102|gb|CD798276.1|CD798276
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|352764964|gb|FQ473612.1|FQ473612
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|110363678|gb|EC927285.1|EC927285
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAACAGGAAT
EST: gi|351038515|gb|FQ464381.1|FQ464381
EST:     TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAG                         ATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAAC
genomic: TGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaact ... gtgatcatagATTCTAGATGTGGCAGTTTCCCTTGCAAAAGTTGCTGATGTGAAC