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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTGgtagatactatttaacacccctaccgtcctttatacatattttcaaataccgcatatttttgtttggtttttcttttctttctttcttctcttttttggtttgggggtggggtttctgatcgtgttggtgctctcatcag

Basic information

species Vitis vinifera
transcript Vv13s0019g03600.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110685257|gb|EE063468.1|EE063468
EST:     GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTG                         CAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
genomic: GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTGgtagatacta ... ctctcatcagCAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
EST: gi|32271533|gb|CD720692.1|CD720692
EST:     GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTG                         CAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
genomic: GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTGgtagatacta ... ctctcatcagCAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
EST: gi|110690518|gb|EE067687.1|EE067687
EST:     GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTG                         CAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTA-
genomic: GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTGgtagatacta ... ctctcatcagCAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
EST: gi|22014931|gb|BQ799965.1|BQ799965
EST:     GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTG                         CAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
genomic: GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTGgtagatacta ... ctctcatcagCAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
EST: gi|110425488|gb|EC991873.1|EC991873
EST:     GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTG                         CAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
genomic: GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTGgtagatacta ... ctctcatcagCAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
EST: gi|22013467|gb|BQ798501.1|BQ798501
EST:     GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTG                         CAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA
genomic: GGAGACTCTAGCTTCTCTTTTACCAATTCAATGATTCAGAATTTTGACTGgtagatacta ... ctctcatcagCAGAACAGCTGGGATAGCCCGATATTGTAGAACTGGATCTTTGCCGTTTAA