Sequence
atgc intronic sequence ATGC exonic sequenceCATGGCAAAGCTTTTCCATGGAATTATCCAGTTCAACAACATATTGATTGATTTTGATAGAGACATATGGAGCTATATTTCTGTAGGTTACTTTAAGCAGgtaaggaatcttacatgaataaatatttttattgggtttgtctcatatacaaataatgtggatcatttaacattcaaaatcttgagcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os03g19930.2 (Oryza sativa), 5'ss of exon 5
CATGGCAAAGCTTTTCCATGGAATTATCCAGTTCAACAACATATTGATTGATTTTGATAGAGACATATGGAGCTATATTTCTGTAGGTTACTTTAAGCAGgtaagga-atcttacatgaataaatattttta-ttgggtttgtctcatata-caaataatgtggatcatttaacattcaaaatcttgagcag---------------------------------------
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TATCTCGAAGCTCTTCAATCTATTTGTTCAGTTTAACAATGTCTTGACTGATTTCGATAGAGACATGTGGACCTATATATCACTAGGCTACTTCAAGCAGgtaatactaacatgcaaggactgttctttaaggtttggttgaattcgtttagtacatagtgggaaaaacttagtggtctacagttttagattctgtttgaacttactgcatccttccaaatgttgttccag
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G42130.1 (Glycine max), 5'ss of exon 5
CATGGCAAAGCTTTTCCATGGAATTATCCAGTTCAACAACATATTGATTGATTTTGATAGAGACATATGGAGCTATATTTCTGTAGGTTACTTTAAGCAGgtaaggaatcttacat-gaataaatatttttattgggtttgtctcatatacaaataatgtggatcatttaacattcaaaatctt--gagcag
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CATGGCAAAGCTTTTTCATTTGCTCATCCAGTTCAATAATATATTAATCGATTTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAAGCAGgtgagctttcttatatagtagcaataaccagactatggagctatactttaagagcggcaataatcttttcatttacaaaattttttatgcag
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G39300.1 (Glycine max), 5'ss of exon 5
CATGGCAAAGCTTTTCCATGGAATTATCCAGTTCAACAACATATTGATTGATTTTGATAGAGACATATGGAGCTATATTTCTGTAGGTTACTTTAAGCAGgtaaggaatcttacatga-ataaatatttttattgggtttgtctcatatacaaataatgtggatcatttaacattcaaaa--tcttgagcag--------
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CATGGCAAAGCTTTTTCATTTGCTCATCCAGTTCAATAATATATTGATTGAATTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAACCAGgtgagctttctgatatagtagcaataacctgagtatgttgctatactttaagagcgacagtaatcttttcatttacaaaactttttatgcagaccactaa
upper sequence: Vv13s0019g03330.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G06780.1 (Glycine max), 5'ss of exon 5
CATGGCAAAGCTTTTCCATGGAATTATCCAGTTCAACAACATATTGATTGATTTTGATAGAGACATATGGAGCTATATTTCTGTAGGTTACTTTAAGCAGgtaaggaatcttacatga-ataaatatttttattgggtttgtctcatatacaaataatgtggatcatttaacattcaaaa--tcttgagcag
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CATGGCAAAGCTTTTTCATTCGCTCATCCAGTTCAATAATATATTAATCGATTTTGATAGAGATGTGTGGGGCTATATATCTTTGGGTTACTTTAAGCAGgtgagctttcttatatggtaaaattaaccagagtatggtgctatactttaagagcagcaataatcttttcatttacaaaactttttatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37187463|gb|CF606816.1|CF606816EST: ATTTTGATAGAGACATATGGAGCTATATTTCTGTAGGTTACTTTAAGCAG ATAACAAAGGCTGGTGAGATTGGGTCTTCAACCATGCCTCACAAAGTGAAT
genomic: ATTTTGATAGAGACATATGGAGCTATATTTCTGTAGGTTACTTTAAGCAGgtaaggaatc ... tcttgagcagATAACAAAGGCTGGTGAGATTGGGTCTTCAACCATGCCTCACAAAGTGAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGGCAAAGCTTTTCCATGGAATTATCCAGTTCAACAACATATTGATTGATTTTGATAGAGACATATGGAGCTATATTTCTGTAGGTTACTTTAAGCAGgtaaggaatcttacatgaataaatatttttattgggtttgtctcatatacaaataatgtggatcatttaacattcaaaatcttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT