Sequence
atgc intronic sequence ATGC exonic sequenceAAGAGGTTGGCGAACGTTCAAAAGACCTGGAGTGGATGCTTTCTTGGAACACCTAGCCCAGTTTTATGAGATCGTTGTGTACTCTGACCAGCAGAGTATGgtaatgtttattgtcatttttctttttgtggaatatctgtcaataccttctgtaaatatttaagccattcttttatttaatttgtacgaacttcttattttgtgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g00900.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S192_75V6.1 (Physcomitrella patens), 5'ss of exon 6
AAGAGGTTGGCGAACGTTCAAAAGACCTGGAGTGGATGCTTTCTTGGAACACCTAGCCCAGTTTTATGAGATCGTTGTGTACTCTGACCAGCAGAGTATGgtaatgtttattgtcatttttctttttgtggaatatctgtcaataccttctgtaaatatttaagccattcttttatttaatttgtacgaacttcttattttgtgtag
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TAGAGGTTGGCGAACTTTCAAACGACCTGGAGTGGATGCGTTTTTAGAGAAGCTTGCTCAGCACTATGAGATAGTCGTCTACTCTGATCAACTCAACTTCgtaa-gttaacttcctcacgtcttctctctctctctctctctct-ctctctctctctctctctctctctctctctctctctctctctctctctctctctctc-----
upper sequence: Vv12s0057g00900.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: PP1S134_69V6.1 (Physcomitrella patens), 5'ss of exon 6
AAGAGGTTGGCGAACGTTCAAAAGACCTGGAGTGGATGCTTTCTTGGAACACCTAGCCCAGTTTTATGAGATCGTTGTGTACTCTGACCAGCAGAGTATGgtaa---tgtttattgtcatttttctttttgtggaatatctgtcaataccttctgtaaatatttaagccattcttttatttaatttgtacgaacttcttattttgtgtag
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TAGAGGTTGGCGAACTTTTAAACGACCTGGAGTAGAAGCTTTCTTGGAGCAGCTCGCTCAGTACTATGAGCTAGTCGTCTACACAGATCAGCTCAACTTTgtaagcgcttctcccgccgtcataacttcatctgagcaagtagcaata--tgcgaaaaggattt---cccatcgtttatc-agtatttaggaagtta--attgtatgc--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110420227|gb|EC986492.1|EC986492EST: ACCTAGCCCAGTTTTATGAGATCGTTGTGTACTCTGACCAGCAGAGTATG TATGTTGATCCTGTTCTTGAAAGGCTTGATCAGAAAGGATGTATACGATAT
genomic: ACCTAGCCCAGTTTTATGAGATCGTTGTGTACTCTGACCAGCAGAGTATGgtaatgttta ... ttttgtgtagTATGTTGATCCTGTTCTTGAAAGGCTTGATCAGAAAGGATGTATACGATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAGGTTGGCGAACGTTCAAAAGACCTGGAGTGGATGCTTTCTTGGAACACCTAGCCCAGTTTTATGAGATCGTTGTGTACTCTGACCAGCAGAGTATGgtaatgtttattgtcatttttctttttgtggaatatctgtcaataccttctgtaaatatttaagccattcttttatttaatttgtacgaacttcttattttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC