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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTGAGAATTATGCAGAGAAATACTATAATCGACCTGATGTGCAGAAGGCCATGCATGCAAATTCTACTGGAATTCCTTACAAATGGACTGCTTGCAGgttgttttcacaatttaatttgatctttttgaatttatcatatacgagagatcttagcagatatgatgtgttcataaaagagggtttggtgatctttttgtgttgggcag

Basic information

species Vitis vinifera
transcript Vv11s0037g00320.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g55130.1 (Oryza sativa), 5'ss of exon 6
GTACTGAGAATTATGCAGAGAAATACTATAATCGACCTGATGTGCAGAAGGCCATGCATGCAAATTCTACTGGAATTCCTTACAAATGGACTGCTTGCAGgttgttttcacaattta-atttgatctttttgaatttatcatatacgagagatcttagcagatatgatgtgttcataaaagagggtttggtgatctttttgtgttgggcag
| || ||||  || || ||||| ||||| || || || ||||| ||||||||||||||||| ||    ||||| |||||||||| |||||| || ||||||||| |    ||  | | ||||  | || ||||  ||       |  |  ||  || |   ||  |  | |||  ||| |  |  |||||        |||  || | |||
GCACGGAGACATACGCCGAGAAGTACTACAACCGGCCGGATGTTCAGAAGGCCATGCATGCCAACATCACTGGGATTCCTTACAGATGGACAGCCTGCAGgttgatgcatcagctgacatttttttttcttgatatttcttggcatcactgaggttgg--aattgggagagtt--taacaatgcatttggg-------ttggatttgacag

upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G08090.1 (Glycine max), 5'ss of exon 8
GTACTGAGAATTATGCAGAGAAATACTATAATCGACCTGATGTGCAGAAGGCCATGCATGCAAATTCTACTGGAATTCCTTACAAATGGACTGCTTGCAGgttg---ttttcacaat-ttaatttgatctttttgaatttatcatatacgagagatcttagcagatatgatgtg-ttcataaaagagggtttgg---tgatctttttgtgttgggcag----------------------------------------
||||||| ||||||||||||||||||||||| |  || || |||||||| || ||||||||||||  |||    |||||||||||||||||||||||||||||    ||||||  || |||   || | ||    ||   |  | | |    | |    | ||  | || | |  || | ||   |   |         ||  || |  |||                                              
GTACTGAAAATTATGCAGAGAAATACTATAACCTTCCAGAAGTGCAGAAAGCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttgctttttcattatgttatactggtgttagcaaaaaaaaaaaacaaacaaaaagaaaacac-tgtgctttaatttacaacttaaaatcaaaattcaattcttctaagttctatgaaatgacaagttttaagacatgcctttggtttattggacag

upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G36600.1 (Glycine max), 5'ss of exon 6
GTACTGAGAATTATGCAGAGAAATACTATAATCGACCTGATGTGCAGAAGGCCATGCATGCAAATTCTACTGGAATTCCTTACAAATGGACTGCTTGCAGgttg---ttttcacaatttaatttgatctttttgaatttatcatatacgagagatcttagcagatatgatgtgttcataaaagagggtttggtgatctttttgtgttgggcag------------------------------
||||||| ||||||||||||||||||||||| |  || || |||||||  || |||||||| ||   |||    |||||||||||||||||||||||||||||    ||||||| || | ||    | |     |  | | || | ||        |||    | |   |    ||| |||      | |  | |  | | ||   ||   ||                              
GTACTGAAAATTATGCAGAGAAATACTATAACCTTCCAGAAGTGCAGATAGCAATGCATGCGAACGTTACCAACATTCCTTACAAATGGACTGCTTGCAGgtttggtttttcactatgttatactgtttagaaaagataaacaaaaacactgtgctttaatttacaacttaaaatca-aaatccaattcttctaaattctatgaaatgacaagttttaacacatggcttggtttattggacag

upper sequence: Vv11s0037g00320.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT4G30610.1 (Arabidopsis thaliana), 5'ss of exon 6
GTACTGAGAATTATGCAGAGAAATACTATAATCGACCTGATGTGCAGAAGGCCATGCATGCAAATTCTACTGGAATTCCTTACAAATGGACTGCTTGCAGgttgttttcacaatttaatttgatctttttgaatttatcatatacgagagatcttagcagatatgatgtgttcataaaagagggtttggtgatctttttgtgttg-ggcag
|||| |||| |||||||||||| || | ||| || || ||||| ||||  |||||||| || |||  |||||||||||  || |||||||| ||||||||||       ||| ||   ||  | |   |     | |  || ||   || |  ||     |||| |  || || | |||||     ||||    | |||| |||| |||||
GTACGGAGAGTTATGCAGAGAAGTATTTTAACCGTCCCGATGTTCAGAGAGCCATGCACGCTAATGTTACTGGAATTCGCTATAAATGGACAGCTTGCAGgtaa-----acagttcgcttc-accacctaatgatgactatgta-atgacactttgc---atataac-tgatcctgaaagaaa---tggtttcttgtttgggttgaggcag