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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATACTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcattacgaactggtttttggattgtattcagcttacacttttatgaagatgcccttgcttcaatattgtactgcttttcactttgattttgttttatctttttatttatgatattgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04970.t01
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352794402|gb|FQ481633.1|FQ481633
EST:     CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAG                         GTGTATCCAGAAGGGAAAATGGGTCAGCATTTCTCACATTTGAAACCGGGT
genomic: CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcatt ... gatattgcagGTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT
EST: gi|110387459|gb|EC952124.1|EC952124
EST:     CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAG                         GTGTATCCAGAAGGGAAAATGAGTCAGCATTTCTCACATTTGAAACCGGGT
genomic: CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcatt ... gatattgcagGTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT
EST: gi|110689922|gb|EE066580.1|EE066580
EST:     CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAG                         GTGTATCCAGAAGGGAAAATGAGTCAGCATTTCTCACATTTGAAACCGGGT
genomic: CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcatt ... gatattgcagGTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT
EST: gi|33401973|gb|CF207600.1|CF207600
EST:     CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAG                         GTGTATCCAGAAGGGAAAATGAGTCAGCATTTTTCACATTTGAAACCGGGT
genomic: CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcatt ... gatattgcagGTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT
EST: gi|161714699|gb|FC064483.1|FC064483
EST:     CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAG                         GTGTATCCAGAACGGAAAATGAGTCAGCATTTCTCACATTAGACACCGGGT
genomic: CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcatt ... gatattgcagGTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT
EST: gi|351034937|gb|FQ458294.1|FQ458294
EST:     CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAG                         GTGTATCCAGAAGGGAAAATGAGTCAGCATTTCTCACATTTGAAACCGGGT
genomic: CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcatt ... gatattgcagGTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT
EST: gi|33402755|gb|CF208382.1|CF208382
EST:     CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAG                         GTGTATCCAGAAGGGAAAATGAGTCAGCATTTCTCACATTTGAAACCGGGT
genomic: CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcatt ... gatattgcagGTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT
EST: gi|110728735|gb|EE104563.1|EE104563
EST:     CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAG                         GTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT
genomic: CTCCTATATCAGATCCAGATTCCAAGGGTTACTTTGATTTATTAATAAAGgtatagcatt ... gatattgcagGTGTATCCAGAAGGGAAGATGAGTCAGCATTTCTCACATTTGAAACCGGGT