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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTATACAAGgtaattgctttgacgtgcagtgcatatatttgcacttctcattcagactatgcttgggagtttttttaatagtgatatgcatttgttgttgtatag

Basic information

species Vitis vinifera
transcript Vv09s0002g05110.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA15G01580.2 (Glycine max), 5'ss of exon 6
AAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTATACAAGgtaattgctttgacgtgcagtgcatatatttgcacttctcattcagactatgcttgggagtttttttaatagtgatatgcatttgttgttgtatag----------
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AAAGGCTATTGAAATTCTGGAAGCGTATGAAGGGACATTGGAAGATGATTATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTGTATAAGgtctttcctctggctgttgctgcagctattt------cttatttaatgcatatagcataatgcctcttcacataatttttgtttgatgtaacttttacctcaatta

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G22180.1 (Glycine max), 5'ss of exon 6
AAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTATACAAGgtaattgctttgacgtgcagtgcatatatttgcacttctcattcagactatgcttgggagtttttttaatagtgatatgcatttgttgttgta--tag----
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CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGAAGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgttttcctctggcagtgtgtttgctgctgttactttttttaat-gcatgatgcttattcagatatttggtgctt-catgtaacttttaccgtaattagcttt

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G43760.1 (Glycine max), 5'ss of exon 6
AAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTATACAAGgtaattgctttgacgtgcagtgcatatatttgcacttctcattcagactatgct-tgggagtttttttaatagtgatatgcatttgttgttgtatag----
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AAAGGCTATTGAAATTCTGGAAGCGTATGAAGGGACATTGGAAGATGATTATCCTCCAGAAAATGAATGGTGTGAGCATGGGGAAATGCTTTTGTATAAGgtctttcctctggatgttgctgcaactatttcctgtt-taatgcatatagcataatgcctcttcacataatttttgtttgatgtaacttttacctcaatta

upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 6
AAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTATACAAGgtaattgctttgacgtgcagt-gcatatatttgcacttctcattcagactatgcttgggagtttttttaatagtgatat-gcatttgttgttgtatag------
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CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGATGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgttttcctctggctgtgtgtttgcagctgttt-cttttttaatgca--ttatgcttattcaaatattggtgcttgatgtagcttttactgtaat-tagctttct