Sequence
atgc intronic sequence ATGC exonic sequenceGCCTAGTACCTTTAAAGCCTACCGCTACCAACAGCATCGGTGGTCGTGTGGCCCTGCTAATCTTTTCAGGAAAATGGTAATGGAGATTGTAAGAAACAAGgtcagtgttgtttcttgacctccacatttgaaatgaaaatttagaacctaaaatctaggtgattaactctccctttttcttgttaatgtttactgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA03G34800.1 (Glycine max), 5'ss of exon 6
GCCTAGTACCTTTAAAGCCTACCGCTACCAACAGCATCGGTGGTCGTGTGGCCCTGCTAATCTTTTCAGGAAAATGGTAATGGAGATTGTAAGAAACAAGgtcagtgt----tgtttcttgacctccacatttgaaatgaaaatttagaaccta---aaatctaggtgattaactct--ccctttttcttgt-----taatgtttactgcag
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GCCAAGTACTTTCAAGGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGCCCAGCCAATCTTTTTAGGAAAATGGCCATGGAGATCATAAACAACAAGgtaagtttattttgttttcttgaattatcatttatcaggaatatgcaggaacaagacaaactatgttgactgcttatgatccaaattcatgtgtatgttatgtccattgcag
upper sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA19G37480.1 (Glycine max), 5'ss of exon 6
GCCTAGTACCTTTAAAGCCTACCGCTACCAACAGCATCGGTGGTCGTGTGGCCCTGCTAATCTTTTCAGGAAAATGGTAATGGAGATTGTAAGAAACAAGgtcagtg---ttgtttcttgacctccac-atttgaaatgaaaattt--agaaccta---aaatctaggtgattaactctccct----ttttcttgt---taatgtttactgcag
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GCCAAGTACTTTCAAGGCCTACCGCTACCAACAGCACCGTTGGTCTTGTGGTCCAGCCAATCTTTTTAGGAAAATGGTCATGGAGATCATAAATAACAAGgtatataagtttatttatttttttccttgaattatcaggaatatatgcaggagcaggacaaaatttgttgactacttttgctccaaattcatatgtatgttatgtccattgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34543461|gb|CF511693.1|CF511693EST: GCCCTGCTAATCTTTTCAGGAAAATGGTAATGGAGATTGTAAGAAACAAG AAAGTGTCTCTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTT
genomic: GCCCTGCTAATCTTTTCAGGAAAATGGTAATGGAGATTGTAAGAAACAAGgtcagtgttg ... tttactgcagAAAGTGTCTTTGTGGAAGAAGGTCCATGTGATTTACAGCTTCTTCATAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCTAGTACCTTTAAAGCCTACCGCTACCAACAGCATCGGTGGTCGTGTGGCCCTGCTAATCTTTTCAGGAAAATGGTAATGGAGATTGTAAGAAACAAGgtcagtgttgtttcttgacctccacatttgaaatgaaaatttagaacctaaaatctaggtgattaactctccctttttcttgttaatgtttactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA