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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgacaacaatagtaccattgagaattatttcatgtttctaatggttaatggcgtggtggagctaacgcataactacatggatcctcag

Basic information

species Vitis vinifera
transcript Vv06s0009g03150.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os01g59360.1 (Oryza sativa), 5'ss of exon 6
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgacaacaatagtaccattgagaattatttcatgttt---ctaatggttaatggcgtggtggagctaacgcataactacatggatcctcag
| || || ||||| ||||| || || |||||| ||||||| ||||||| ||| || ||||||||||| || || || || |||||||| || ||||||||||||  ||  ||      |||   |   | ||   |   ||   | |  |   | |    |  |  |  |||    |       |   ||  |||
ATTACGACGAGTTCATCACAGCGACGATGCACATGAACAGGATGGACAGAGAGGAGCATCTTTACACCGCGTTTCAGTATTTCGACAAGGACAACAGCGGgtaactactgcagattctcca--aaatttgatgcaaaaattacacaagagagcagtcaaattctttatttaagatctgtgcgtgtacctctgcag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os05g41270.1 (Oryza sativa), 5'ss of exon 6
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgacaacaatagtaccattgaga-attatttcatgttt-ctaatggttaatggcgtggtggagctaacgcataactacatggatcctcag------------------------------
| || || ||||| ||||| || || |||||| ||||||| |||||||  || || || || ||||| || ||||| ||||||||||| || ||||||||||          | | | |  || ||     ||  ||| |    |    || |   |       |    |         | ||   || |  ||                              
ATTACGAGGAGTTCATCACTGCGACGATGCACATGAACAGGATGGACAGGGAGGAGCACCTCTACACCGCGTTCCAGTACTTCGACAAGGACAACAGCGGgtgcattttctgaaaattctgttcagctgcaatgccatttcagtttgcagtcagcagtagaacagtatcagtatgcggttgcaaacattcagagctgaaaaccaacgcacatttctgctgacag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G365815_T01 (Zea mays), 5'ss of exon 5
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgacaacaatagtaccattgagaattatttcatgtttctaatggttaatggcgtggtggagctaacgcataactacatggatcctcag
|||| || || ||  |||| |||||| ||||  |||||| | |||| | |||||| || ||||||||||| ||||| || |||||||| || ||||||||||||    |||  ||  |  ||  ||            ||    | |    ||  | |    |  |  |   |||| |   |     | |||
ACTACGACGAATTCGTCACCGCAACAGTGCATATGAACAAACTGGATAGAGAAGAGCACCTTTACACAGCATTCCAGTATTTCGACAAGGACAACAGCGGgtaagttgaacgttaaaatgatacagctggtacctgaattctggacgacacatatcataacaggacacatatataattcgtttatctcacag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AC203294.3_FGT001 (Zea mays), 5'ss of exon 4
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaa-tgacaaca---atagtaccattgaga-attatttcatgtttcta--atggttaatggcgtggt---ggagctaacgcataactacatggatcctcag------------------
|||| || ||||| |||||||| || |||||| ||||||| |||||||  ||||| || || ||||| || ||||| ||||||||||| ||   |||||||||| | | | ||   | || | ||||  ||   |    |  |  |||   |||   |||   | |     || |  ||  | || || |   |  | ||                    
ACTACGAGGAGTTCATCACGGCGACGATGCACATGAACAGGATGGACAGGGAAGAACACCTCTACACCGCGTTCCAGTACTTCGACAAGGACGGCAGCGGgtaaattaaaccagatagagcagcattccgacggtgccgcgcgcatctgccatgtccaataatgcgtcgccggcgtgaaaccttagctgctctggccgtctcgtggcttactggctgcag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G08140.1 (Glycine max), 5'ss of exon 6
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgacaacaatagtaccattgagaattatttcatgtt-tctaatggttaatggcgtggtgga--gctaacgcataact---acatggatcctcag-------------
| || || ||||| ||||| |||||||||||| ||||||||||| ||| |||||| ||||||||||| |||||||||||||| || ||||||||||||||||||     |  ||| ||  |||||  ||   | ||||    | | | || ||     |||||    | |||  ||    |   | ||   || |  |             
ATTACGACGAGTTCATCACCGCAACAATGCACATGAACAGAATGAACAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGgtaagag--attatactag-attgaatatatatgcatggagcccatttgtaaactatttggtgtgttgataaatcaaggttctaatatcattcttatgccacaaaaatcag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA14G04010.1 (Glycine max), 5'ss of exon 6
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgacaacaatagtaccattgagaattatttcatgttt-ctaatggttaatggcgtggt-ggagctaacgcataactacatggatcctcag--------------
| |||||||| || || || |||||||||||| ||||| ||||| |||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||| || || |  |  | ||   ||| | | |  || |   | | |  ||       || | || | |||   |||  |       || |                 
ATTATGATGAATTCATTACTGCAACAATGCACATGAACCGAATGAACAAAGAAGATCATCTTTATACTGCCTTCCAATACTTTGACAAAGATAACAGCGGgtaaagaaaaaagaaaaagcaactagattgaatatatatcagccactcctttggaaattgattggtgttaagttataggttttaatctcattgctttgtcataatcag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA02G44720.1 (Glycine max), 5'ss of exon 6
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgacaacaatagtaccattgagaattatttcatgtttctaatggttaatggcgtggtggag---ctaa-cgcataactacatggatcctcag
| || ||||| || || || |||||||||||| ||||| ||||| |||||||||| |||||||| || || ||||||||||| || |||||||||||||||||| || || || |     |||||  || || |||   | |   | |  ||| |  || |  ||   |||| | |||  ||   |  ||  ||||
ATTACGATGAATTCATTACAGCAACAATGCACATGAACCGAATGAACAAAGAAGATCATCTTTATACTGCTTTCCAATACTTTGATAAAGATAACAGCGGgtaaagaaaa-aacaactagattgaatat-atatcagcctcccctttggaaattgattgttaaaggttctaatctcattgctttgtc-ataatcag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G36000.1 (Glycine max), 5'ss of exon 6
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaat-gacaacaatagtaccattgagaattatt-tcatgtttctaatggttaatgg---cgtggtggagctaacgc---ataactacatggat-cctcag-------
| || || ||||| ||||| |||||||||||  ||||||||||| ||| |||||| |||||||| || |||||||||||||| || ||||||||||| ||||||  ||    | |||    | |    ||  ||  ||    | |      || | |    ||  | ||   || |    |  | ||  |  || || ||        
ATTACGACGAGTTCATCACCGCAACAATGCAAATGAACAGAATGAACAGAGAAGAACATCTTTATACTGCCTTCCAATACTTTGATAAAGATAACAGTGGgtaagagattctactagattgaatatatatgcttgccaaccctttgtaaactacttggtctgtcatagaatcaaggttctaatattatttttatgccacaaaaatcag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G12180.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgac--aacaat--agtaccattgagaattatttcatgtttctaatggttaatggcgtggtggagctaacgcataactacatggatcctcag------
||||||  ||||||||| | || ||||||||  | |||||| | |||| |||||| ||||||||| ||||||||||| |||| |||||||| ||||| ||||||  ||   ||| |  |||    |  | || |  |||  |  | ||||  | |||   |  |   |   |||  | | | || | | ||           
ACTATGGCGAGTTTATCGCAGCCACAATGCATATCAACAGACTTGACAGAGAAGAACATCTTTACTCAGCCTTCCAACACTTTGACAAAGACAACAGTGGgtaagtacttgacagtacagtttgttatataactgattccagactttaatcatgaata-tgaagcttatgaaacaaaaatccacctcgctctctgttcccag

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G19360.1 (Arabidopsis thaliana), 5'ss of exon 5
ACTATGATGAGTTTATCACGGCAACAATGCACCTGAACAGAATGGACAAAGAAGACCATCTTTACACAGCCTTCCAATACTTCGACAAAGATAACAGCGGgtaatgacaacaatagtaccattgagaattatttcatgtttctaatggttaatggcgtggtggagctaacgcataactacatggatcctcag
||||||  ||||| ||  | || ||||||||| | |||||  | |||| |||||| ||||| ||| ||||||||||| |||| |||||||| ||||| ||||||       ||| |  |   || | |  | ||| || | | |||  || |   |       |  | | ||     | | || |       
ACTATGGGGAGTTCATTGCAGCTACAATGCACATCAACAGGCTCGACAGAGAAGAGCATCTCTACTCAGCCTTCCAACACTTTGACAAAGACAACAGTGGgtaa-----gtaattgagcacatgtgtaacagttc-tgatac-aat--ttgaaaccaaaaccaaa-tgatgctctgttccttgcag------