Sequence
atgc intronic sequence ATGC exonic sequenceGTTTAAACCTGGCGAGAATCCCCGACCTAGGCCAAAAGATCGCCAAATGATCCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCAAATGGGGCAAAGgtaactcatctttcttcctttcttcctcacttttttgaggacattttactatattgagatactgattatgtcctctaatctactgatgtggtttaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G09990.1 (Glycine max), 5'ss of exon 1
GTTTAAACCTGGCGAGAATCCCCGACCTAGGCCAAAAGATCGCCAAATGATCCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCAAATGGGGCAAAGgtaactcatctttctt---cctttcttcctcacttttttgaggacattttactatattgagatactga--ttatgtcctctaatctactgatgtggtttaacag
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ACTTAAACCAGGAGAGAACCCTAGGCCTAGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTGAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatgtagcctttcttgtgctttcctatatctcagtcctgaacatatatttc-acattgggatactgactttattttctttaatctcttattacaattcaacag
upper sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA11G18290.1 (Glycine max), 5'ss of exon 7
GTTTAAACCTGGCGAGAATCCCCGACCTAGGCCAAAAGATCGCCAAATGATCCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCAAATGGGGCAAAGgtaactcatctttcttcctttcttcct-cacttttttgaggacattttact--atattgagatactgattatgtcctctaatctactgatgtggtttaacag
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ACTTAAACCTGGAGAGAACCCTAGGCCTCGGCCTAAAGATCGCCAAATGATTCAAGATCGTGTAAAAGAGTTGCGGGAAATTGTGCCAAATGGAGCAAAAgtatatagcttttcttgtgcttttcctacatctcagtcctgaacttatatttaacatttgaatactaactattttctttaatctcttgttacaattcaacag
upper sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G31460.2 (Glycine max), 5'ss of exon 9
GTTTAAACCTGGCGAGAATCCCCGACCTAGGCCAAAAGATCGCCAAATGATCCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCAAATGGGGCAAAGgtaactcatctttcttcctttcttcctcacttttttga------ggacattttactatattgagatactgattatgtc-ctctaatctactgatgtggtttaacag
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GCTTAAACCTGGAGAGAATCCCAGGCCTCGACCGAAAGATCGTCAAATGATTCAAGATCGAGTGAAAGAGTTACGAGAAATTGTGCCAAACGGAGCAAAAgtatttccttgtttattctttcattcctaattttttggtaatttaaatatcttgttctgtcactgagttgtttttttttctttgatctctttttatgacttgacag
upper sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G38930.1 (Glycine max), 5'ss of exon 7
GTTTAAACCTGGCGAGAATCCCCGACCTAGGCCAAAAGATCGCCAAATGATCCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCAAATGGGGCAAAGgtaactcatctttcttcctttcttcctcacttttttgaggacattt-tactatattgagatactgattatgtcctctaatctactgatgtggtttaacag--
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GCTTAAACCAGGAGAGAATCCCCGGCCTCGACCGAAAGATCGTCAAATGATTCAAGATCGAGTGAAAGAGTTACGAGAAATTGTGCCAAACGGAGCAAAAgtatttccttgcttattatttcatcccttattttttggtaatttaaatatcttgttcagtcactgagt-tgtttttttttct-ttgatctctttttatgact
upper sequence: Vv06s0009g00440.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT2G27230.2 (Arabidopsis thaliana), 5'ss of exon 5
GTTTAAACCTGGCGAGAATCCCCGACCTAGGCCAAAAGATCGCCAAATGATCCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCAAATGGGGCAAAGgtaactcatctttcttcctttcttcctcacttttttgaggacattttactatattgagatactgattatgtcctctaatctactgatgtggtttaacag
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GCTTAAACCAGGAGAGAACCCAAGACCAAGGCCTAAAGATCGCCAAATGATCCAAGATCGTGTCAAAGAGCTGCGTGAAATAATACCAAACGGTGCAAAAgtaagtgaaaaacttatctgttcttggcaaatt-----aaacaatcc-ctaagaaaggttattactaacaaagagta-catgtggtttttatttaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294965489|gb|GW839060.1|GW839060EST: CCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCCAAATGGGGCAAAG TGTAGCATTGATGCACTGCTTGAACGCACCATCCAGCATATGCTTTTCTTG
genomic: CCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACC-AAATGGGGCAAAGgtaactcatc ... ggtttaacagTGTAGCATTGATGCACTGCTTGAACGCACCATCAAGCATATGCTTTTCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTAAACCTGGCGAGAATCCCCGACCTAGGCCAAAAGATCGCCAAATGATCCAAGATCGTGTGAAAGAGTTACGCGAAATTGTACCAAATGGGGCAAAGgtaactcatctttcttcctttcttcctcacttttttgaggacattttactatattgagatactgattatgtcctctaatctactgatgtggtttaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG