Sequence
atgc intronic sequence ATGC exonic sequenceATTATCTTTGTATACGTAGAAATGGACAATGAAGAAATTGGAAGGCCTGTTTCAGATTATTTTGGGGTCACTGGGGATGCTCCCAAAgtactttctcctaccttctccaagactgttcctttcatgcatttgtgttgctattctgaacaattattgtttgacatgtgtagaaaataaccttttaaattacattcattgctttccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA13G40130.1 (Glycine max), 5'ss of exon 6
ATTATCTTTGTATACGTAGAAATGGACAATGAAGAAATTGGAAGGCCTGTTTCAGATTATTTTGGGGTCACTGGGGATGCTCCCAAAgtactttctcctaccttctccaagactgttcctttcatg---catttgtgttgctattctgaacaattat-tgtttgacatgtgtagaaaataaccttttaaattacattcattgctttccag-----
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TTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGAATGCTCCAAAAgtaattgtttcttccctgttttaatttttttaaatgacaagtcatgaaattcattacattaacatgttacatcctttaaataatttggaagta--tatttaagtaaccagt-tgaatttccaacatag
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G29550.1 (Glycine max), 5'ss of exon 6
ATTATCTTTGTATACGTAGAAATGGACAATGAAGAAATTGGAAGGCCTGTTTCAGATTATTTTGGGGTCACTGGGGATGCTCCCAAAgtactt-tctcctaccttctccaagactgttcctttcatgcatttgtgtt-gctattctgaacaattattgtttgacatgtgtagaaaataaccttttaaattacattcattgctttccag-----
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TTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGAATGCTCCAAAAgtatttgtttcttccctgctctaatttttttaatgataagtaatgaaattcattacattaaatattacatcctttatataatttggaagta--tatttaagtaaccagt-tgaatttccaatatag
upper sequence: Vv06s0004g02890.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA12G07260.1 (Glycine max), 5'ss of exon 6
ATTATCTTTGTATACGTAGAAATGGACAATGAAGAAATTGGAAGGCCTGTTTCAGATTATTTTGGGGTCACTGGGGATGCTCCCAAAgtact--ttctcctaccttctccaagactgttcctttcatgcatttgtgttgctattctgaacaattattgtttgacatgtg-tagaaaataaccttttaaattac---attcattgctttccag------
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CTGATCTTTGTTCATGTGGAATTGGATAATGAAGATGTAGGAAAGCCTGTTGCAGATTATTTTGGTATCACTGGGAATGGTCCCAAAgtaataatttccccttttttattaattttattttagtggttgagtcacaagattcttctaatgttaagttgttagattcaaaatagccaaataggaagtaaattaggtaactgatgaaattcccaatatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37188365|gb|CF607714.1|CF607714EST: TTGGAAGGCCTGTTTCAGATTATTTTGGGGTCACTGGGGATGCTCCCAAA GTTCTTGCATACACTGGAAATGATGATGCAAGGAAATTCATATTAGATGGA
genomic: TTGGAAGGCCTGTTTCAGATTATTTTGGGGTCACTGGGGATGCTCCCAAAgtactttctc ... tgctttccagGTTCTTGCATACACTGGAAATGATGATGCAAGGAAATTCATATTAGATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTATCTTTGTATACGTAGAAATGGACAATGAAGAAATTGGAAGGCCTGTTTCAGATTATTTTGGGGTCACTGGGGATGCTCCCAAAgtactttctcctaccttctccaagactgttcctttcatgcatttgtgttgctattctgaacaattattgtttgacatgtgtagaaaataaccttttaaattacattcattgctttccag
- - - - - - - - - - - - - - - - - - - TGGAAG