Sequence
atgc intronic sequence ATGC exonic sequenceGTGCCAACCGATACTTTTATTTGTGTTTGAATGACTTGCTAGCACTTGGTGGGGGTGGGAACTTTGCTTTGTGCTTGGACGAAGATTTgtaagttgctttcttggccatttgaccataaacttgttccaacttgtctttgcttggtgatggaaagctattcctaaatttgtttctctgattcttaatttctctatgagaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G33400.1 (Glycine max), 5'ss of exon 6
GTGCCAACCGATACTTTTATTTGTGTTTGAATGACTTGCTAGCACTTGGTGGGGGTGGGAACTTTGCTTTGTGCTTGGACGAAGATTTgtaagttgctttcttggccatttgaccataaacttgttccaacttgtctttgcttggtgatggaaagctattcctaaatttgtttctctgattcttaatttctctatgagaag
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GTGTCAACCGGTACTACTACATGTGTTTGAATGACCTACTTGCACTTGGTGGTGGGGGTAATTATGCTTTATGCTTAGAAGAAGATTTgtaagtatttaatagtgctgcttagtt------ttgttccagtacattttaatt--gtaattgaagtacactagtggaatctcttcttgaatgcatcctttttggttaaaag-
upper sequence: Vv05s0049g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA06G44170.1 (Glycine max), 5'ss of exon 2
------------GTGCCAACCGATACTTTTATTTGTGTTTGAATGACTTGCTAGCACTTGGTGGGGGTGGGAACTTTGCTTTGTGCTTGGACGAAGATTTgtaagttgctttcttggccatttgaccataaacttgttccaacttgtctttgcttggtgatggaaagctattcctaaatttgtttctctgattcttaatttctctatgagaag
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ATTTTTGTGCAGGTGTCAACCGGTACTACAACATGTGTTTGAATGACCTACTTGCACTTGGTGGTGGGGGTAATTATGCTTTATGCTTAGAAGAAGATTTgtaagtatttaatagtgctgcttagtt------ttgttccagtacattttaatt--gtaattgaagtacactagtggaatctcttcttgaatgcatcctttttggttaaaag-
upper sequence: Vv05s0049g01850.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G34240.1 (Glycine max), 5'ss of exon 6
GTGCCAACCGATACTTTTATTTGTGTTTGAATGACTTGCTAGCACTTGGTGGGGGTGGGAACTTTGCTTTGTGCTTGGACGAAGATTTgtaagttgctttcttggccatttgaccataaacttgttccaacttgtctttgcttggtgatggaaagctattcctaaatttgtttctctgattcttaatttctctatgagaag
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GTGTCAACCGATACTACTACATGTGTTTGAATGGCCTACTTGCACTTGGTGGTGGGGGTAATTATGCTTTATGCTTAGAAGAAGATTTgtaagtatttaatatcgatgtttactt------ttgttccagtacat-tttaattgtaattgaagtaccgctagtggaatctcttcttgaatgtatccttttggt-tgaaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122691297|gb|EC972115.1|EC972115EST: CTAGCACTTGGTGGGGGTGGGAACTTTGCTTTGTGCTTGGACGAAGATTT GTTAAGTGGAACCAGTGGACCCTGTGAAACATTTGGGAATTTATGCTTGGC
genomic: CTAGCACTTGGTGGGGGTGGGAACTTTGCTTTGTGCTTGGACGAAGATTTgtaagttgct ... ctatgagaagGTTAAGTGGAACCAGTGGACCCTGTGAAACATTTGGGAATTTATGCTTGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCCAACCGATACTTTTATTTGTGTTTGAATGACTTGCTAGCACTTGGTGGGGGTGGGAACTTTGCTTTGTGCTTGGACGAAGATTTgtaagttgctttcttggccatttgaccataaacttgttccaacttgtctttgcttggtgatggaaagctattcctaaatttgtttctctgattcttaatttctctatgagaag
- - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA