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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag

Basic information

species Vitis vinifera
transcript Vv04s0008g06810.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: LOC_Os02g08360.1 (Oryza sativa), 5'ss of exon 7
GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag
 || || ||||| || ||||| | ||| || ||||| ||||||||||||||||| ||||||||||| || ||  | |||||||| ||||| || ||  ||||||   | ||    |  |  || |   ||      ||   ||  ||| |  |      ||   || |||      ||  |||| || ||                
ACTACCAGATGAATTAGATCCCATTGGGAAACTTCCAGGATCATTTGATGATGGGGATCCACAAACCACGAACTTATATGTTGGGAATCTTTCTCCTAAGgttggcattctccaatgcgcttgttttgtttatacataaggtta-actttacatcatgatt--aacttgatggttgcattatattatatgacag------------

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G133308_T02 (Zea mays), 5'ss of exon 7
GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggat---gctcaattctctgttattcttttactc-tttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag
 || || ||||| |||||||||| ||| |   |||| ||||||||||||||||||||||| ||||| || ||  | |||||||| ||||| || ||  ||||||| |||     | |  | |   | | || |       ||| | ||  |   || |    || |||   |                                      
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttgctttctctgctgtgcggtttagttaaacttgtatgcattgtcttgttagctttacatgctatggtgttag------------------------------------

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GRMZM2G174785_T01 (Zea mays), 5'ss of exon 7
GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag
 || || ||||| |||||||||| ||| |   |||| ||||||||||||||||||||||| ||||| || ||  | |||||||| ||||| || ||  ||||||| |||     | |  | |  ||| |   ||  ||| | ||  ||  |||    |   ||    ||     |                               
ACTACCAGATGAATTTGATCCGACTGGGAGATTTCCAGGATCATTTGATGATGGTGATCCTCAAACCACCAACTTATATGTTGGCAATCTATCTCCCAAGgttgctttctctgctgtgcggt-ttcattaaacttgtatgcgttgtcttgttagctttacatgc-tatggtgttag------------------------------

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA16G15820.1 (Glycine max), 5'ss of exon 3
GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag
|||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||  ||||   | |        |     | |  |  || |||| |||||| |   || |       || | |     | |       | |||| |||               
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgtcagagtgtc--ccctcaatagatgga--ctttgttgttctttgagaattaaggagatgttagtctcatcatcgcagttttgtaat-tgtag-------------

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G34030.2 (Glycine max), 5'ss of exon 7
GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag
|||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||  |||||  | |         |  ||        || |||| ||||||     || |   |   || |  || |      ||   | | |  |||               
GCTGCCTGATGACTTTGACCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAAACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGgttagagtgtc---ccctcaataaatggg-ctttgttgttctttgggaattaaggacatgttag-tctcaccttggcagttttttaattgtag-------------

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: AT5G25060.1 (Arabidopsis thaliana), 5'ss of exon 6
---GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag
   ||| |||||||| |||||||| ||||| | ||   | ||||| ||||| |||||||| ||||||||||| ||||| |||||||| ||||| || ||| ||||    || ||  || ||   ||    ||  | |||| || | |  | |  |  |  ||||        | |   | ||  ||||||    |||    |    |||
TGAGCTACCTGATGATTTTGATCCCAGTGGGAGGC---CAGGATCGTTTGACGATGGTGACCCACAAACTACGAATCTGTATGTTGGGAATCTGTCCCCAAAGgtgttttttctt-ttcttacttg---gatcatatgttgttttctctcgccattgtattctt-------aatattcataaggtataat----tttatgctcacgtag

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ16538 (Selaginella moellendorffii), 5'ss of exon 5
---GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag
   ||| || || ||    |||||||  || |||||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||| |||||     | ||| | |||    | ||  |    || |||   | || | |  | || | |  |                                           
CGAGCTTCCCGAAGA---AGATCCGAACGGCAAGCTTCCTGGATCGTTTGATGATGGTGATCCACAGACGACCAATCTCTACGTTGGAAATCTCTCACCGCAGgtaaagcttcta-tgttttctcgttctctctcttgatatatatata-tatgcactggtttcag-------------------------------------------

upper sequence: Vv04s0008g06810.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: EFJ32251 (Selaginella moellendorffii), 5'ss of exon 5
---GCTGCCTGATGACTTTGATCCGAGTGGAAAGCTTCCTGGATCATTTGATGATGGTGATCCACAAACTACTAATCTCTATGTTGGAAATCTCTCACCACAGgttgcattcctaatttttggatgctcaattctctgttattcttttactctttaatgctctttggacctgaaaccaacaaaatataatctgtttttattttttatag
   ||| || || ||    |||||||  || |||||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||||||||| |||||     | ||| | |||    | ||  |    || |||   | ||    |  |||| ||   |   | |                                    
CGAGCTTCCCGAAGA---AGATCCGAACGGCAAGCTTCCTGGATCGTTTGATGATGGTGATCCACAGACGACCAATCTCTACGTTGGAAATCTCTCACCGCAGgtaaagcttcta-tgttttctcgttctctctcttgatatatatatatatatatatgcact---ggtttcag-----------------------------------