1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGTGGAGACAAATGAATGCCTGGATAATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAGgtaataaccaaaattcactgggattacacatgcttaattgttaatgtgcctattaacagttgcatttatttactcag
species | Vitis vinifera |
transcript | Vv03s0091g00740.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAACATCACTGCATGCAAG GATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAGEST: gi|110359067|gb|EC919937.1|EC919937
genomic: CAACATCACTGCATGCAAGgtaataacca ... atttactcagGATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAG
EST: ATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAG GATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAGEST: gi|110718216|gb|EE094793.1|EE094793
genomic: ATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAGgtaataacca ... atttactcagGATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAG
EST: ATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAG GATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAGEST: gi|349830520|gb|FQ416830.1|FQ416830
genomic: ATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAGgtaataacca ... atttactcagGATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAG
EST: ATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCGAG GATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAG
genomic: ATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAGgtaataacca ... atttactcagGATACATTTCGCGGGAGAGTGTGTGAATGCCCCTTGGTTGATGGTGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGGAGACAAATGAATGCCTGGATAATAATGGTGGTTGCTGGCAAGATAAAACAGCCAACATCACTGCATGCAAGgtaataaccaaaattcactgggattacacatgcttaattgttaatgtgcctattaacagttgcatttatttactcag
- - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - GCAAGA