Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCTTCCTTCTTGTTGTATCTATCTGATGTAGAAGAAGGTGGAGAAACTATGTTTCCTTTTGAGgtgagatggggaaatttgttgacttctcttgtttttcattttttataatatccataatttatgttgggtctagagtagtcaccttaattttttgatgtgtgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0091g00520.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA20G26800.1 (Glycine max), 5'ss of exon 5
GTTGCTTCCTTCTTGTTGTATCTATCTGATGTAGAAGAAGGTGGAGAAACTATGTTTCCTTTTGAGgtgagatggggaaatttgttgacttctcttgtttttcattttttataatatccataatttatgttgggtctagagtagtcaccttaattttttgatgtgtgcag-------------------
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ATTGCTTCCTTCTTGTTATACCTATCAAATGTAGAAGCAGGAGGAGAAACAATGTTCCCTTATGAGgt-agattagggaatttactg---tcttttgtctgatactttacat------cgtgaatcttgatgcgtgta-agtagtcatttaagtattccaatttgcagggtggtttgaatattgataag
upper sequence: Vv03s0091g00520.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA10G40520.1 (Glycine max), 5'ss of exon 6
GTTGCTTCCTTCTTGTTGTATCTATCTGATGTAGAAGAAGGTGGAGAAACTATGTTTCCTTTTGAGgtg-agatggggaaatttgttgacttctcttgtttttcattttttataatatccataatttatgttgggtctagagtagtcaccttaattttttgatgtgtgcag
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ATTGCTTCCTTCTTGTTATACCTATCAAATGTAGAAGCGGGAGGAGAAACAATGTTCCCTTATGAGgtatagattagggaatttactg---tcttttgtctgatactttaca------ccgtgaatcttgatgcgtgta-agtagtcatttaagtattccaatttgcag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134078|gb|CB919416.1|CB919416EST: TGTATCTATCTGATGTAGAAGAAGGTGGAGAAACTATGTTTCCTTTTGAG CATGACTTGAATATCGGTACGGGCTATGATTACAAAAAATGCATTGGTTTG
genomic: TGTATCTATCTGATGTAGAAGAAGGTGGAGAAACTATGTTTCCTTTTGAGgtgagatggg ... atgtgtgcagCATGACTTGAATATCGGTACGGGCTATGATTACAAAAAATGCATTGGTTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCTTCCTTCTTGTTGTATCTATCTGATGTAGAAGAAGGTGGAGAAACTATGTTTCCTTTTGAGgtgagatggggaaatttgttgacttctcttgtttttcattttttataatatccataatttatgttgggtctagagtagtcaccttaattttttgatgtgtgcag
- - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - GGAGAA