Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGTGGATTCTCCAGGTGGAGTCCATGAAAATACAGGGCTAAGGATTACTGAGGTAGATTCAGTGCTGACATCTGGAGAAGTTTTAGAATTAATACAGgtaacagtcaggttctgtattttaataaattttattgatgctctcattgtaataataattcttatccttctctttttagaaatgataaatggcagcaccattagtaatgtttctatatttgatttttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv00s0508g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA17G01120.1 (Glycine max), 5'ss of exon 6
TGAAGTGGATTCTCCAGGTGGAGTCCATGAAAATACAGGGCTAAGGATTACTGAGGTAGATTCAGTGCTGACATCTGGAGAAGTTTTAGAATTAATACAGgtaacagtcaggttctgtattttaataaattttattgatgctctcattgtaataataattcttatccttctctttttagaaatgataaatggcagcaccattagtaatgtttctatatttgatttttgcag
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CCAATTTGAGTCCCATGCTGAAGGGCGTGAGAGTGAAATTAACATGATTTCAGAGGTAGATTCAGTATTGACAACTGGAGAAGTTTTGGAATTGATTCAGgttata------------agtttgatgcattccct-----ctttttttgtgatt----tttttcctcttctaatttaacttatgatatgta-------tactaatg-cacatttgagttcaatctt-acag
upper sequence: Vv00s0508g00020.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G39690.1 (Glycine max), 5'ss of exon 6
TGAAGTGGATTCTCCAGGTGGAGTCCATGAAAATACAGGGCTAAGGATTACTGAGGTAGATTCAGTGCTGACATCTGGAGAAGTTTTAGAATTAATACAGgtaacagtcaggttctgtattttaataaattttat------tgatgctctcattgtaa-taataattcttatccttctctttttagaaatgataaatggcagcaccattagtaatgtttctatatttgatttttgcag
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CCAATTTGAGTCCCATGTTGAAGGGCTTGAGAGTGAAATTAACATGATTTCAGAGGTAGATTCAGTATTGACAACTGGAGAAGTTTTGGAATTGATTCAGgttatataaatttgctgcattccatctttttttgtgatttttttttcttttaacgtaacttatgatactaatgcacatttggttcaatcttacag-------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110699299|gb|EE076186.1|EE076186EST: CTGAGGTAGATTCAGTGCTGACATCTGGAGAAGTTTTAGAATTAATACAG TTAAAATCAGTGGATTTCAAAAACTTGGGAGAGTCTCCTCTAGATAGATTG
genomic: CTGAGGTAGATTCAGTGCTGACATCTGGAGAAGTTTTAGAATTAATACAGgtaacagtca ... atttttgcagTTAAAATCAGTGGATTTCAAAAACTTGGAAGAGTCTCCTCTAGATAGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGTGGATTCTCCAGGTGGAGTCCATGAAAATACAGGGCTAAGGATTACTGAGGTAGATTCAGTGCTGACATCTGGAGAAGTTTTAGAATTAATACAGgtaacagtcaggttctgtattttaataaattttattgatgctctcattgtaataataattcttatccttctctttttagaaatgataaatggcagcaccattagtaatgtttctatatttgatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT