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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAAACCAATCCCATATTTTCAATTCAGCAGACGAGGTGATCAACTCTCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctctcagatacttcttatcatattctcaaacatttcctagtaaggttctcttggtattacttattttcatctgaactattgatttgtaactgcag

Basic information

species Vitis vinifera
transcript Vv00s0181g00130.t01
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0181g00130.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA08G06330.1 (Glycine max), 5'ss of exon 1
ATTCCAAACCAATCCCATATTTTCAATTCAGCAGACGAGGTGATCAACTCTCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctctcagatacttcttatcatattctcaaacatttcctagtaaggttctcttggtattacttattttcatctgaactattgatttgtaact--gcag
 ||||||| || |  ||| | |  | | ||||||| ||||||||||| || ||||||||||||||||  |||  ||||||  | ||| ||||  ||||||||| ||| |  | ||||||  ||  ||| ||       | |  |  |  | |||| ||  | |   | ||||  || ||||||| |  |||  |  |  ||||
CTTCCAAAACAGTTGCATCTCTATACTGCAGCAGATGAGGTGATCAATTCCCTACTTGATTTGCGACTTGAAAAGTGGGGTCTGCCTCCATTTGAAGATTgtatacccc--aaatactt--taagatagtcctttttgtatg-tgttgtgtttcttttattgtatgtcatttatatttgaactagtattttaaatttttgcag

upper sequence: Vv00s0181g00130.t01 (Vitis vinifera), 5'ss of exon 6
lower sequence: GLYMA07G30970.1 (Glycine max), 5'ss of exon 6
ATTCCAAACCAATCCCATATTTTCAATTCAGCAGACGAGGTGATCAACTCTCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctctcagatacttcttatcatattctcaaacatttcctagtaaggttctcttggtattac-ttattttcatctgaactattgattt--gtaactgcag
 ||||||| || || ||| | |  | | ||||||| ||||||||||| || ||||||||||||||||  |||  ||||||  | ||| ||||  ||||||||||||| |  | ||||||  ||  ||| || ||     |   |  |  | |||| ||  |  ||  | ||||  || |||||||||  |||   | | |||||
CTTCCAAAACAGTCGCATCTCTATACTGCAGCAGATGAGGTGATCAATTCCCTACTTGATTTGCGACTCGAAAAGTGGGGTCTGCCTCCATTTGAAGATTgtaaacccc--aaatactt--taagatagtc-cattttgtatgtgttgtgtttctttttattgtatgtcatttatatttgaactattattttaaattattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122688581|gb|EC921621.1|EC921621
EST:     TCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: TCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
EST: gi|122688643|gb|EC920309.1|EC920309
EST:     TCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: TCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
EST: gi|122688583|gb|EC921683.1|EC921683
EST:     ACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: ACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
EST: gi|122688609|gb|EC923003.1|EC923003
EST:     TCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: TCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
EST: gi|122688550|gb|EC920300.1|EC920300
EST:     TCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: TCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
EST: gi|122688646|gb|EC920398.1|EC920398
EST:     TCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: TCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
EST: gi|122688569|gb|EC921114.1|EC921114
EST:     TCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: TCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
EST: gi|122688616|gb|EC923325.1|EC923325
EST:     TCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: TCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
EST: gi|122688561|gb|EC920714.1|EC920714
EST:     TCTACTTGATTTGCGACCAGAACAGTGGGGCTTACCTTCATTCCAAGATT                         GGGTCGAGGATACCCTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA
genomic: TCTACTTGATTTGCGACCAGAACTGTGGGGCTTACCTTCATTCCAAGATTgtaaacctct ... gtaactgcagGGGTCGAGGATACCTTACCAGTAGAGCCTTGGTATATAGGTGGGCCTGTCA