1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTTCTATTAACTTATGGATGAACAGTGCTCAAGCTAGATCAAGTACTCACTACGATCCACACCATAATCTTCTATGCATAATTGCTGGCTGCAAGCAAGgtttgctttttgtttctaaggaagcatcttttcctacttaccttccactcatatgttcatggttatgtaagggctccttcaatatttatttgaggatgat...
species | Vitis vinifera |
transcript | Vv00s0179g00190.t01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTACGATCCACACCATAATCTTCTATGCATAATTGCTGGCTGCAAGCAAG TTGTTTTATGGCCCCCTTCTGCAAGTCCCTTGTTATATCCAATGCCTATATEST: gi|161713340|gb|FC063357.1|FC063357
genomic: CTACGATCCACACCATAATCTTCTATGCATAATTGCTGGCTGCAAGCAAGgtttgctttt ... tgcttctcagTTGTTTTATGGCCCCCTTCTGCAAGTCCCTTGTTATATCCAATGCCTATAT
EST: CTACGATCCACACCATAATCTTCTATGCATAATTGCTGGATGCAAGCAAG TTGTTTTATGGCCCCCTTCTGCAAGTCCCTTGTTATATCCAATGCCTATA
genomic: CTACGATCCACACCATAATCTTCTATGCATAATTGCTGGCTGCAAGCAAGgtttgctttt ... tgcttctcagTTGTTTTATGGCCCCCTTCTGCAAGTCCCTTGTTATATCCAATGCCTATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCTATTAACTTATGGATGAACAGTGCTCAAGCTAGATCAAGTACTCACTACGATCCACACCATAATCTTCTATGCATAATTGCTGGCTGCAAGCAAGgtttgctttttgtttctaaggaagcatcttttcctacttaccttccactcatatgttcatggttatgtaagggctccttcaatatttatttgaggatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccttc