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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttttattacatgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag

Basic information

species Vitis vinifera
transcript Vv19s0176g00140.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g11120.1 (Oryza sativa), 5'ss of exon 5
AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttttattacatgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag
 ||| | ||||||||||| |||||||| |||| ||| || ||||| ||||||||||||||||| |||||  | ||||||||||| |  ||||| || ||||||         |   | |  | ||||| |  | |  | ||  | | ||||| | | |  | ||  |       |  |||||   ||| |  | ||   |||| |||  | |                                                             
TGCACTTAACCTTGGTGGCACAATGCTTGGTTTCTACCCTGTTAGAGTCTTACCTTCAAAGACAGCTATATTGCCTGTGAATCCAAAGTTCCTTCCTAGGgtaagttcttgtattgtatgcgttgtttcaccttt--tgatgccagaattattcctcttctccacata------accttagtactcatactgtgttgtgtctggccc-atag-------------------------------------------------------------

upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G40060.1 (Glycine max), 5'ss of exon 5
AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttt-tattacatgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag
 ||  |||| |||||||| ||  |||| || ||||||||||| |||||  | |||||||| ||||| || ||||| |||||||||||||||||||| ||||||  | |     ||||| |     ||||  | |  | ||  |  || ||| |  |  | || |   ||||    ||  |||  |  |||  | |   | | |   | |                                                                 
CGCTCTAAATCTTGGTGGTACTGTGCTTGGATACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCAGTGAATCCTACATTCCTCCCTAGGgtatgaat-----actttctgatcctttttat-acataaacata-gtgttagatgtagttttgcccttttgctgtatgataggaattatttgact---gatttagacata----------------------------------------------------------------

upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 5
AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttttattacatgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag
 ||  |||| ||||| || ||  |||| || |||||||| || |||||  | |||||||| ||||| || ||||| |||||||||||||||||||| ||||||  | |     |||||       ||||   |||    | |  |  | | || ||||      |   ||    ||  ||| |||  ||   |   || | |   | |                                                                 
TGCTCTAAATCTTGGGGGTACCGTGCTTGGATACTATCCGGTCAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCGGTGAATCCTACATTCCTCCCTAGGgtatgaat-----actttcggatcctttt---tatacatagtgtttaaatgtagttttgcccttttgctgtgtgataatagagag--ttatttgactgatttagacatag---------------------------------------------------------------

upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 5
AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttttatta-catgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag
 || ||||  |||||||| |||||| | || || || |||||||| |||||||||||||| |||||||| ||||| |||||||| ||||| ||||||||||||  |      || ||     |  ||||  | |   |   |  |   ||| | |||||  | ||    ||     ||  | |     |||| ||  || | |   |                                                                   
GGCTTTAAGTCTTGGTGGAACAATGATCGGATATTACCCAGTTAGAGTCTTACCTTCAAAAACTGCTATTCTTCCAGTGAATCCCACATTTCTCCCCAGGgtaaaaaacaagaagtt-----ccatttttctcagcctgcatagtagcttacagttttagaaacaaaaatgatggtttccactat---ttcctttggtgttttattcag-----------------------------------------------------------------

upper sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G14450.1 (Arabidopsis thaliana), 5'ss of exon 5
AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttttattacatgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag
||| |||| ||||||||| |||||||| || | ||| || || ||||||||||| ||||| ||||| ||||| || |||||||| ||||| || || ||||||  | ||  ||| | ||   |||    ||||    ||||      ||| |  |||||    |  ||||     ||| | |     ||  |  | | || ||    |||||||  ||||                                                     
AGCTTTAAGCCTTGGTGGAACAATGCTCGGGTTCTACCCGGTGAGGGTCTTACCCTCAAAAACTGCCATCCTACCAGTGAATCCCACATTTCTTCCAAGGgta--aatgctcaaatgttcctctga---agttccactaatca----attttggtttta----agttttgagttttttcaatcttactttgacatcttctatgt---tgtggtt-aattcag---------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110379205|gb|EC944385.1|EC944385
EST:     TACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGG                         TCAGAGGATGAGCGGGAAATGTGTGCTAGGACTGTCTATTGTACAAATATT
genomic: TACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtgg ... tcaaatgcagTCAGAGGATGAGCGGGAAATGTGTGCTAGGACTGTCTATTGTACAAATATT
EST: gi|33404787|gb|CF210414.1|CF210414
EST:     TACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGG                         TCAGAGGATGAGCGGGAAATGTGTGCTAGGACTGTCTATTGTACAAATATT
genomic: TACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtgg ... tcaaatgcagTCAGAGGATGAGCGGGAAATGTGTGCTAGGACTGTCTATTGTACAAATATT