1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAATATTTAGAGAAATTTGAGTCTTCAATGTATTATCCTTTGCAATATGCAGACATGGATTCCGAGCTTCACATGAgtaagtacatcccttcacatgagcttcacagagtttcttccattgaaactcaaagcaaaattaaattggatgatttttttgaggaatgcttctgtgagtt...
species | Vitis vinifera |
transcript | Vv19s0090g01780.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGCTTCACATGA TGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAGEST: gi|161720772|gb|FC070280.1|FC070280
genomic: GAGCTTCACATGAgtaagtacat ... tctctttcagTGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAG
EST: AATGTATTATCCTTTGCAATATGCAGACATGGATTCCGAGCTTCACATGA TGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAG
genomic: AATGTATTATCCTTTGCAATATGCAGACATGGATTCCGAGCTTCACATGAgtaagtacat ... tctctttcagTGCCTAGAGGAATGGAGACCTCAAGATTGCTCAGAAAGCAGATTATGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAATATTTAGAGAAATTTGAGTCTTCAATGTATTATCCTTTGCAATATGCAGACATGGATTCCGAGCTTCACATGAgtaagtacatcccttcacatgagcttcacagagtttcttccattgaaactcaaagcaaaattaaattggatgatttttttgaggaatgcttctgtgagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaggaat