Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCGTGAAAATGCTGAATCAATTGCGTTCTATAGTGGCGAGGAAAGTGAAATGCAACTTCTGATTCAGCGTTTCAGGAGTGCTTTTGAAAATTTAACCgtatggatcccttatatttcttctatatgcattcccatgattatgatttcactgtttgcagtcaaaggctttttccttgaggatgtcattttctcttaag...

Basic information

species Vitis vinifera
transcript Vv19s0085g01190.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g11946.2 (Oryza sativa), 5'ss of exon 5
TATTCGTGAAAATGCTGAATCAATTGCGTTCTATAGTGGCGAGGAAAGTGAAATGCAACTTCTGATTCAGCGTTTCAGGAGTGCTTTTGAAAATTTAACCgtatggatcccttatatt--tcttctatatgcattc-ccatgattatgatttcactgtttgcagtcaaaggctttttccttgaggatgtcattttctcttaag
  || | |||||||||||||||||||| || ||| | || || |||| |||| |||||||| || |  | || |||||||| |||||||||||  | | |||| |  |  ||| |||     |||| |   ||| |  ||| |||    || ||||  |||        | | |||   || |   | |     |    |   
AGTTAGAGAAAATGCTGAATCAATTGCTTTTTATGGCGGTGAAGAAAATGAATTGCAACTTTTGTTGGATCGATTCAGGAGGGCTTTTGAAAACCTTAGCgtaagctttgcttgtatagactttctttcaccatacatcattattcattttacactacttgtttgttctgacatttagttttatagtattggaataggat---

upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G17110.1 (Glycine max), 5'ss of exon 7
TATTCGTGAAAATGCTGAATCAATTGCGTTCTATAGTGGCGAGGAAAGTGAAATGCAACTTCTGATTCAGCGTTTCAGGAGTGCTTTTGAAAATTTAACCgtatggatcccttatatttcttctatatgcattcccatgattatgatttcactgtttgcagtcaaaggctttttccttgaggatgtcattttctcttaag---------
  |||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||  | ||||| || |  ||||||||||||||| | || ||| |        ||||||||||| ||||  || ||||  |  |  |   ||| |||    |||    |  | ||  ||   | |||| ||  | | | |         
GGTTCGGGAAAATGCTGAATCAATTGCTTTCTACAGTGGTGAAGAAAGTGAAATGCAACTTCTTCTGCAGCGCTTTAAAAGTGCTTTTGAAAATCTGACTgtaag--------atatttcttctttatgt-ttaccattttacttttaaaactatttttgttcattatcagtatctatgttaaggtcaattgatttcatgagttttatc

upper sequence: Vv19s0085g01190.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G54350.1 (Arabidopsis thaliana), 5'ss of exon 4
TATTCGTGAAAATGCTGAATCAATTGCGTTCTATAGTGGCGAGGAAAGTGAAATGCAACTTCTGATTCAGCGTTTCAGGAGTGCTTTTGAAAATTTAACCgtatggatcccttatatttcttctatatgcattcccatgattat-gatttcactgt---ttgcagtcaaaggctttttccttgaggatgtcattttctcttaag
  |  | |||||||||||||| ||||| |||||| | |||||  | | ||||||||| |||||| ||||||||||||| || |||||||| |||||||| |||    | |   |  |||||| |  ||  ||    ||   ||| |||| |||  |   || || ||||    ||||  | ||  |                  
AGTGAGGGAAAATGCTGAATCTATTGCTTTCTATGGAGGCGAACAGAATGAAATGCAGCTTCTGCTTCAGCGTTTCAGAAGCGCTTTTGATAATTTAACTgtaaaatttctcgagctttcttatccatttatatatatatctatagattgcacaataaattacattcaat--tttttcacctgcag------------------