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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAGgtcagaatcacagtagtttgtggttttctattgttggtctttgcgttatttgcattattgcttcttttctctgtcccttaattttgtcatctttgtatgtcccttgaccag

Basic information

species Vitis vinifera
transcript Vv19s0014g02320.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G35490.2 (Glycine max), 5'ss of exon 4
CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAGgtcagaatcacagtagtttgtggttttctattgttggtctttgcgttatttgcattattgcttcttttc-----tctgtcccttaattttgtcatctttgtatgtcccttgaccag
||||||||||||||||| || |||||||||||||||||||||||||| | || | |  ||  | | ||| | | | |  | ||    ||  |     |     |||||||      | |    |  |||||| |   ||||   |      |||||||
CTTCCTCCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAGgtcagtaacagaatcattgttagctttgtttggcttttgttattattggtcttcatgagatttctttttaagatttttcatcccaattttatttgcttttgttccatgatgaccag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 5
CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAGgtcagaatcacagtagtttgtggttttctat---tgttggtctttgcgttatttgcattattgcttcttttctctgtcc-cttaattttgtcatctttgtatgtcccttgaccag
||||||||||||||||| || |||||||||||||||||||||||||| | || | | |||  ||||||| | |   | ||| | ||   | | ||  ||  ||| ||| ||   | | ||  |  || ||| |  ||||| |  || || |||||||
CTTCCTCCTGAATGGACAGACCAGTTTGAGTCAGGCATTCAGgtcagtaacagaatcgttgttggttttgtttggcttttgttattattgctcttcacaagatttctttttagatttttcaacccaaatttattttcttttt--gttccatgaccag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 5
CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAGgtcagaatcacagt-agtttgtggttttctattgttggtct--------ttgcgttatttgcattattgcttcttttctctgtcccttaattttgtcatctttgtatgtcccttgaccag
||||||||||||||||  |||||||||||||||||||||||||| ||   || | | | ||    |  | ||||| |||||||        ||   | || | | |||  | |||  |  | |     |   || | | || |   | | | || |  ||||
CTTCCTCCTGAATGGATAGATCAGTTTGAGTCAGGCATTCAGgtgagggacaaaatgaattaacagcatgctattattggtctcagaaagtttttttaatgtactttaaagtttcaatcatttcattttcttttattttatttgcatttattccattgccag

upper sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 5
CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAGgtcagaatcacagt-agtttgtggttttctattgttggtctttg--cgttatt----tgcattattgcttcttttctctgtcccttaattttgtcatctttgta--tgtcccttgaccag
||||||||||||||||  |||||||||||||||||||||||||| ||   || | | | ||    |  | ||||| ||| |||  |   | | ||    || | | |    | |      | ||  ||| |||| |  | |||| |  | | || |  ||||
CTTCCTCCTGAATGGATAGATCAGTTTGAGTCAGGCATTCAGgttagggccaaaatgaattaacagcatgctattattgatctcagaaagcttttccaatgtactttaaagtttcaatcatttcatttacttttattttatttgcatttattccattgccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719944|gb|FC068689.1|FC068689
EST:     CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAG                         ACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGC
genomic: CTTCCTCCTGAATGGACCGATCAGTTTGAGTCAGGCATTCAGgtcagaatca ... ccttgaccagACCATAGCTGTAATTCAAGCTGGCCATGGCCTTCTTCAACTCGGTTCCTGC