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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGgcaagtcatagatactgctatcagctataacatgtatttatatgccatcattttgctgcttcagcctttgggggagttctaagtaacttggggttttgtctgttccag

Basic information

species Vitis vinifera
transcript Vv19s0014g01900.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G081745_T01 (Zea mays), 5'ss of exon 4
ACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGgcaagtcatagatactgc-tatcagctataacatgtatttatatgccatcattttgctgcttcagcctttgggggagttctaagtaacttggggttttgtctgttccag
| | || || | ||| ||| | ||||| || || || |   |  ||||||||||||| ||| |||| |||||||||||| | |||||| ||||  | |||||| ||  || ||    |  |||     ||| ||  |     |     |   |||||  | ||  |||       |     ||  ||    |  |   |          
AAAGACCATCAAATCATGCCTTGATGAACTTCCAGGCTTTCCACGAACACAGATTGGATTCTTAACCTTTGACAGCACCTTGCATTTTCATAACTTCAAGgcatgttctacatctctcacatctctactaatataaagcataagtttcttcctttgcgtcctccccctcccaca-atcgacaaaaaatgctgcatccagga--------

upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G38830.1 (Glycine max), 5'ss of exon 4
ACAA-ACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGgcaagtcatagatactgctatcagctataacatgtatttatatgccatcattttgctgcttcagcctttgggggagttctaagtaacttggggttttgtctgttccag
 ||| || || |  || ||||| |||||||| || || |   |  | || || || || ||   ||||||||||||||| |||||||||||||| |||||||   |   |       | ||| ||   || ||   ||| ||||  | |   |||    | |||   | |         |||| || | || |  ||   || || |||
-CAATACAATAAAGTCATGCTTAGATGAGCTGCCCGGCTTTCCACGTACGCAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgctgt-------gttattagtattaccaca-attaatatatc-tggcttt----cctcaatttata--------ctaattatcctgtgtgttatgcttttgcag

upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G28520.1 (Glycine max), 5'ss of exon 5
ACAAACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGgcaagtcatag-atactgctatcagctataacatgtatttatatgccatcattttgctgcttcagcctttgggggagttctaagtaacttggggttttgtctgttccag
 ||||| || || || ||||| |||||| | ||||| |   |  ||||||| ||||| ||   ||||||||||||||| |||||||||||||| |||||||   ||  ||  ||| |  || ||    ||| || | |   |||        || | || |  |   | ||        |||| ||   |     ||   || ||||||
CCAAACAATCAGGTCATGCTTAGATGAGTTGCCTGGCTTTCCACGAACACAAATTGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgtagtattatagtattaccattgttaatatatgtccgtatttgccttattagttggtatactttatg--------ctaattattctata--ttacacttttccag

upper sequence: Vv19s0014g01900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA19G41400.2 (Glycine max), 5'ss of exon 5
ACAA-ACTATTAGATCTTGCTTGGATGAGCTACCTGGTTCCACCAGAACACAGATTGGTTTCATAACTTTTGACAGCACCATACATTTTTATAATATGAAGgcaagtcatagatactgctatcagctataacatgtatttatatgccatcattttgctgcttcagcctttgggggagttctaagtaacttggggttttgtctgttccag
 ||| || ||||  || ||||| |||||||| || || |   |  | || || || || ||   ||||||||||||||| |||||||||||||| |||||||   |   |       | ||| ||   || ||   ||| ||||  |     | |||   |||    |||     | || |   |  |||  | |||||          
-CAATACAATTAAGTCATGCTTAGATGAGCTGCCCGGCTTTCCACGTACGCAAATAGGGTTTGCAACTTTTGACAGCACAATACATTTTTATAACATGAAGgtttgctgt-------gttattagtattatcaca-attaatatatc-----tctgccttttctcaatttatactaattattc-tgtcttatgcttttgcag-------