Sequence
atgc intronic sequence ATGC exonic sequenceTGGAGCAGTGATGTTGCGGAGGAAATTTTATCCAGCTGCTACTAAATTCTTGCTTCAGGCAATTGAGAAATGGGATGGAGATGATCAAGATCTTGCCCAGgtatgctagtctcttggaccttgatattctacaaacagacagaagtaatgtgggaccatttgcaaatgcacatgctacttaatgtgttgccttaatatta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0072g00860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G809292_T02 (Zea mays), 5'ss of exon 4
TGGAGCAGTGATGTTGCGGAGGAAATTTTATCCAGCTGCTACTAAATTCTTGCTTCAGGCAATTGAGAAATGGGATGGAGATGATCAAGATCTTGCCCAGgtatgctagtctcttggaccttgatattctacaaacagacagaagtaatgtgggaccatttgcaaatgcacatgct-acttaatgtgttgccttaatatta
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TGGAGCAGTCATGCTACGGAGAAAATTTTATCCAGCTGCTATCAAATATCTGCAGCAAGCAATTGACAAATGGGACAGAGACGAGCAAGATCTTGCGCAGgttagctatgctcaactgtttggtaacattttcttcattttggagtctagcca-actactttgtttttctcttgttgaattaatcgatataagttgtagaa
upper sequence: Vv18s0072g00860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G31640.1 (Glycine max), 5'ss of exon 3
TGGAGCAGTGATGTTGCGGAGGAAATTTTATCCAGCTGCTACTAAATTCTTGCTTCAGGCAATTGAGAAATGGGATGGAGATGATCAAGATCTTGCCCAGgtatgctagtctcttggacc-ttgatattctacaaacagacagaagtaatgtgggaccatttgcaaatgcacatgctacttaatgtgttgccttaatatta-
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TGGTGCAGTGATGCTGCGCAGGAAATTTTACCCTGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCGGATCTTGCCCAGgttagatgacttgtttgattgctaacaaagta-aattaaatttgaattttctttaaaaataggagaata-atagcatctttctgctgttgagttctagtcaa
upper sequence: Vv18s0072g00860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G35950.3 (Glycine max), 5'ss of exon 5
TGGAGCAGTGATGTTGCGGAGGAAATTTTATCCAGCTGCTACTAAATTCTTGCTTCAGGCAATTGAGAAATGGGATGGAGATGATCAAGATCTTGCCCAGgtatgctagtctcttggacc-ttgatattctacaaacagacagaagtaatgtgggaccatttgcaaatgcacatgctacttaatgtgttgccttaatatta-
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TGGTGCAGTGATGCTGCGCAGGAAATTTTACCCTGCTGCTACCAAGTTCTTGCTTCAAGCAATTGAGAAATGGGATGGGGATAATCCGGATCTTGCCCAGgttagatgacttgtttgattgctaacaaagtaaattaaatttgaatttactttaaa--aataggagaataatagcatctttctgccgttgagttctagtcaa
upper sequence: Vv18s0072g00860.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G22700.3 (Arabidopsis thaliana), 5'ss of exon 4
TGGAGCAGTGATGTTGCGGAGGAAATTTTATCCAGCTGCTACTAAATTCTTGCTTCAGGCAATTGAGAAATGGGATGGAGATGATCAAGATCTTGCCCAGgtatgctagtctcttggaccttgatattctacaaacagacagaagtaatgtgggaccatttgcaaatgcacatgctacttaatgtgttgccttaatatta
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TGGTGCAGTGATGTTGAGAAGGAAGTTTTATCCTGCAGCCAACAAGTTTTTGCAACAAGCTATCCAGAAATGGGACGGTGATGATCAAGATCTTGCTCAGgtaa--tagacttttacactaataccgttaccaagtaaataaaa--aatcaattgacactgcaatatacaattcctgagacag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29784943|gb|CB341514.2|CB341514EST: GCTTCAGGCAATTGAGAAA-GATCATGGAGATGATCAAGATCTTGCCCAG GTTTACAACGCACTTGGTGTCAGTTATGTTCGTGATGGGAAGCTTGAAAAG
genomic: GCTTCAGGCAATTGAGAAATGGG-ATGGAGATGATCAAGATCTTGCCCAGgtatgctagt ... tatttaccagGTTTACAACGCACTTGGTGTCAGTTATGTTCGTGATGGGAAGCTTGAAAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAGCAGTGATGTTGCGGAGGAAATTTTATCCAGCTGCTACTAAATTCTTGCTTCAGGCAATTGAGAAATGGGATGGAGATGATCAAGATCTTGCCCAGgtatgctagtctcttggaccttgatattctacaaacagacagaagtaatgtgggaccatttgcaaatgcacatgctacttaatgtgttgccttaatatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagtaa