1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCCTACATGTTTGTCCACGATGGTCTCGTCCACAGGAGATTTCCAGTGGGGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgcaccaccacacacacgatccttcatttttctttttcttttccttttcctttttttgtttttttttttaattttcaactgaatccaacggcctgatcttctgatgcatggtctcag
species | Vitis vinifera |
transcript | Vv16s0050g01090.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTTCCATATGGGCTGTTCTTGGGCEST: gi|110387779|gb|EC952475.1|EC952475
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
EST: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTTCCATATGGGCTGTTCTTGGGCEST: gi|34549741|gb|CF517973.1|CF517973
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
EST: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGCEST: gi|34544824|gb|CF513056.1|CF513056
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
EST: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGCEST: gi|110422537|gb|EC988863.1|EC988863
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
EST: GGCCCATCGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGCEST: gi|110388927|gb|EC953729.1|EC953729
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
EST: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTTCCATATGGGCTGTTCTTGGGCEST: gi|110422253|gb|EC988569.1|EC988569
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
EST: GGCCCATCGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGCEST: gi|110362556|gb|EC926099.1|EC926099
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
EST: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTTCCATATGGGCTGTTCTTGGGCEST: gi|110391353|gb|EC956321.1|EC956321
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
EST: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAA CTCCACCACTCAGACAAATTCAATGGGGTTCCATATGGGCTGTTCTTGGGC
genomic: GGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgc ... atggtctcagCTCCACCACTCAGACAAATTCAATGGGGTCCCATATGGGCTGTTCTTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCTACATGTTTGTCCACGATGGTCTCGTCCACAGGAGATTTCCAGTGGGGCCCATTGCGAACGTGCCCTATTTCAGACGCGTAGCTGCAGCACACCAAgtaagcatgcaccaccacacacacgatccttcatttttctttttcttttccttttcctttttttgtttttttttttaattttcaactgaatccaacggcctgatcttctgatgcatggtctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG