1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCATCGAACCTGATGTTCAACCTAGCGATCTATGTACACGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAGgtataccatcttgctcttctttgtttctataacttcttcttgataggcgaagaaaggtatgtataatataataacaaaaaagtacactgaagtacacagg...
species | Vitis vinifera |
transcript | Vv16s0050g00600.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAG GAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAEST: gi|161719035|gb|FC067655.1|FC067655
genomic: CGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAGgtataccatc ... ttccttgtagGAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGA
EST: CGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAG GAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGA
genomic: CGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAGgtataccatc ... ttccttgtagGAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATCGAACCTGATGTTCAACCTAGCGATCTATGTACACGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAGgtataccatcttgctcttctttgtttctataacttcttcttgataggcgaagaaaggtatgtataatataataacaaaaaagtacactgaagtacacagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaag