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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAGAATCTTTTGTTCGGCCTGCTGTTTTAATAACAGATGCCTATAATGCTTTGAACAATCAGCCTTCTAGACGCCAAAGGGACCAAGAATTCCTAGgtactatgctttcttttttcgattgattagtgtgtgcttataatataatctatgtttctgttttctgtttacagcttttgttttattttattctttcgtt...

Basic information

species Vitis vinifera
transcript Vv16s0050g00590.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0050g00590.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G23880.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTTTAGAATCTTTTGTTCGGCCTGCTGTTTTAATAACAGATGCCTATAATGCTTTGAA---CAATCAGCCTTCTAGACGCCAAAGGGACCAAGAATTCCTAGgtactatgctttcttttttcgattgattagtgtgtgct-tataatat--aatctatgtttctgttttctgtttacagcttttgt-tttattttattctttcgtt---
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---TTACAGTCTTTTGTTCGGCCTGCTGTTCTGATAACCGATGCATATCATGCTCTTTATACCAATCAAACCGCAAGACAGCAAAGGGACAAAGAATTTCTAGgt----tagcttgtagcccaatatgtgttgtgtatcttctatagtatttaaaacagcccgcttctaactgccagaaacatgtgtgcatgtccccatttatcattcag