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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgttagattttacattccagtatttcatgcatcaaactcaccttcaccccatataagtttactcttctgttcaacatttctccatggaaaatgtatcaaggaaaagacctttttcaagtttagcaactcctatcatttgttactaagttcatgctcatgaagaaagctaaaatcagtttctgttggttaacag

Basic information

species Vitis vinifera
transcript Vv15s0048g01680.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0048g01680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G09160.1 (Glycine max), 5'ss of exon 5
CGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgttagattttacattccagtatttcatgcatcaaactcaccttcaccccatataagtttactcttctgttcaacatttctccatggaaaatgtatcaaggaaaagacctttttcaagtttagcaactcctatcatttgttactaagttcatgctcatgaagaaagctaaaatcagtttctgttggttaacag
  ||||||| |||||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||||   ||||| ||||||||||| || || || |||||||||||    || | |    |  |  |  |||   ||  |  |   |    ||||||  |       | |  ||  |||      |   | |||   |    |   |  | |                                                                                 
TATATGGGGTGATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttag----tagagttt--tgctcaagacatttgac--atttatgcttattataagcatctaagaatatataagctttg---gagtgcagtgtgctattataggcatttat---------------------------------------------------------------------------------

upper sequence: Vv15s0048g01680.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G09150.1 (Glycine max), 5'ss of exon 5
CGTATGGGGCGATGATGCAGAGGAATTCCGACCAGAGAGATGGCTTAATGAGAAGGGCCTTTTTTGCCCAGAAAGCCCTTTCAAATTCACTGCATTTCAGgttag--attttacattccagtatttcatgcatcaaactcaccttcaccccatataagtttactcttctgttcaacatttctccatggaaaatgtatcaaggaaaagacctttttcaagtttagcaactcctatcatttgttactaagttcatgctcatgaagaaagctaaaatcagtttctgttggttaacag
  | |||||  ||||||||||||| ||  ||||||| ||||||||| ||||||| ||| |||||   ||||| ||||||||||| || || || |||||||||||   |||| || |   | ||   |  ||| | ||             || || |||||||     |   |   | | |  ||| || |  |   ||     |||  ||||  || |||                                                                        
TATTTGGGGTAATGATGCAGAGGATTTTAGACCAGAAAGATGGCTTGATGAGAATGGCATTTTTAAGCCAGAGAGCCCTTTCAAGTTTACAGCTTTTCAGgttagtagttttgcacttttgcatagga--cattagac-------------atttatgtttact-----gaagagtgtgtttggatgaaagaatttaaaattctgagaaatttt--aaattt------------------------------------------------------------------------