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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAGgtatggtgcattacaaagttatagcagccagacaacaatggtaccaatagttgtgaaactaaaccttttccttctgatgatgcag

Basic information

species Vitis vinifera
transcript Vv14s0030g00710.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 5
CCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAGgtatggtgcattacaaagttatagcagcca------gacaacaatggtaccaatagttgtgaaactaaaccttttccttctgatgatgcag
| |||||||| |||||| | |||||||||||||| ||||| |||||||| |||  || ||      | |  | || |        |||| | |||  ||||  ||     ||| ||| | |   |   |||| |||||
CAATTGGTGCAATATTTGCTGCAACAGATTCTGTCTGCACATTGCAGgtttggaacaatatgtgcctttttccgcaacgttgcagcaaccaaggtgtcaatgctta--gtactgaacttataaat---gatgttgcag

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 6
CCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAGgtatggtgcattacaaagttatagcagccagacaacaatggtaccaatagttgtgaaactaaaccttttccttctgatgatgcag
| |||||||| |||||| | ||||| |||||||||||||| |||||||| ||      ||     ||| |     |   |||| | |||| || |  | || |  || ||| | |   |   ||||||||||
CAATTGGTGCAATATTTGCTGCAACGGATTCTGTTTGCACATTGCAGgtttgaaaatatatttt-ttaaattcttccttcaactaaggtatcactgctagtta--ctgaacttataaat---gatgatgcag

upper sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 6
CCATTGGTGCGATATTTTCAGCAACAGATTCTGTTTGCACGTTGCAGgtatggtgcattacaaagttatagcagc-cagacaacaatggtaccaatagttgtgaaactaaaccttttccttctgatgatgcag
| |||||||| |||||| | ||||| |||||||||||||| |||||||| ||  ||| || |   ||| |      |   |||| | |||| || |  | || |  || ||| | |   |   ||||||||||
CAATTGGTGCAATATTTGCTGCAACGGATTCTGTTTGCACATTGCAGgtttgaagcaatatatttttaaaattcttccttcaactaaggtatcactgctagtta--ctgaacttataaat---gatgatgcag