Sequence
atgc intronic sequence ATGC exonic sequenceCCTCGACACAGAGTTCTTAGCTTCCACATCTACAGATGGTTCTGCAAGAATATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGgtatagtttatttaatataataattttcagtggttatgctaatcttgttcttatttttgagtttgtaattatatatcatgcatttctttcctgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os07g09000.1 (Oryza sativa), 5'ss of exon 5
CCTCGACACAGAGTTCTTAGCTTCCACATCTACAGATGGTTCTGCAAGAATATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGgtatagtttatttaatataataattttcagtggttatgctaatcttgttcttatttttgagtttgtaattatatatcatgcatttctttcctgtag
| | || |||| || |||| ||||||||| || ||||||||||||||||||||||||||| |||| || || || ||| | ||||||||| |||||| || ||| ||||| || ||| | ||||||| || | | ||| || | | | | || || ||
CTTAGATTCAGAATTTTTAGTTTCCACATCCACTGATGGTTCTGCAAGAATATGGAAGATAGATGAGGGGGTACCATTGGTCAATTTGACTCGATCTGCGgtatg----atgcgata----aatttgtgcaagtcatgttc-tcttgttgagatactgaaagccttaaccatttggtgttctggttttctatgcag
upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g58570.1 (Oryza sativa), 5'ss of exon 5
CCTCGACACAGAGTTCTTAGCTTCCACATCTACAGATGGTTCTGCAAGAATATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGgtatagtttatttaat-ataataattttcagtggttatgct--aatcttgttcttatttttgagtttgtaattatatatcatgcatttctttcctgtag
| | ||| | ||||| |||| || ||||| || ||||||||||||||||||||||| ||| |||| || | || | | ||||| | | ||||||| || | | ||| | | ||||| | | | | || || || | | ||||| | | | || ||||| || | | | ||
CTTAGACTCCGAGTTGTTAGTCTCAACATCCACTGATGGTTCTGCAAGAATATGGAATATAGATGAGGGAGCGCCGCTTGTCAATTTGAGTAGATCTTCGgtatcgtatgataaattactgcacttttctattttggtagttgaaactgagtcatttatttgactctcttgtt-tatatt-tgt-tcccccctttacag
upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G158489_T03 (Zea mays), 5'ss of exon 3
CCTCGACACAGAGTTCTTAGCTTCCACATCTACAGATGGTTCTGCAAGAATATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGgtatagtttatttaatataataattttcagtggttatgctaatcttgttcttatttttgagtttgtaa-ttatatatcatgcatttctttcctgtag--------
| | ||| |||||||||||| ||| ||||| | ||||| ||||| ||||||||||||||| |||| || | || || | ||||||||| |||||||| ||| ||||| | || | |||| | | |||||| || |||| || | | || | | | | ||| || ||||
CTTAGACTCAGAGTTCTTAGTTTCAACATCCATTGATGGATCTGCGAGAATATGGAAGATAGATGAGGGCGCACCACTGGTCAATTTGACTCGATCCTCGgtatg------ttatgataattttcttttat--ttatattta-cttgttgagatggttgaaattttgacttcttttccccactttttttctttgtatgcctacag
upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G33180.1 (Glycine max), 5'ss of exon 5
CCTCGACACAGAGTTCTTAGCTTCCACATCTACAGATGGTTCTGCAAGAATATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGgtatagtttatttaatataataattttcagtggttatgctaatcttgttcttatttttgagtttgtaattatatatcatgcatttctttcctgtag
|| ||| |||| || ||||||| || ||||| |||||||| |||||||| |||||||| | |||||||||||||||||||||||| ||||||||||||||| || ||||| || ||| || | | || || || ||| | || | ||| | | |||| | | ||| | || |||
TCTAGACTCAGAATTTCTAGCTTCAACTTCTACTGATGGTTCAGCAAGAATCTGGAAGATTGAAGATGGTGTTCCTTTGACTACTTTGTCTCGCAACTCGgtatggtgtatttgatttaagaacctggggcaag-atctgtatgcagtacttgtatt---gcttg-atccaaatat--ttccttttgtctctttag
upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G34380.1 (Glycine max), 5'ss of exon 5
CCTCGACACAGAGTTCTTAGCTTCCACATCTACAGATGGTTCTGCAAGAATATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGgtatagtttatttaatataataattttcagtggttatgctaatcttgttcttatttttgagtttgtaattatatatcatgcatttctttcctgtag
|| || |||| || ||||||| || ||||| |||||||| |||||||| ||||||| | |||||||||||||||| ||||||| ||||||||||||||| || |||| || ||| || | |||| | | | | ||| || | | | | |||| | | ||| | || |||
TCTAGATTCAGAATTTCTAGCTTCAACTTCTACTGATGGTTCAGCAAGAATCTGGAAGACTGAAGATGGTGTTCCTTTGAATACTTTGTCTCGCAACTCGgtatggtgcatttgatttaagaacct---gtggcaagatctgtat-gcagttacttgtatcgcttaatccaaatat--ttccttttgtctctttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715227|gb|FC066443.1|FC066443EST: TATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCG GATGAGAAGATTGAACTGTGTCGGTTTTCTAAGGATGGGACAAAAC-ATTC
genomic: TATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGgtatagttta ... tttcctgtagGATGAGAAGATTGAACTGTGTCGGTTTTCTAAGGATGGGACAAAACCATTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCGACACAGAGTTCTTAGCTTCCACATCTACAGATGGTTCTGCAAGAATATGGAAGATAAATGATGGTGTTCCTTTGACTACTTTGACTCGCAACTCGgtatagtttatttaatataataattttcagtggttatgctaatcttgttcttatttttgagtttgtaattatatatcatgcatttctttcctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA