1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGgtacatctgcgcgtgtgtgcatatgtgctgtctataacaaagaaaagatatgatcgctaactgacagttaggatataattttgcttgtgatatcgaatta...
species | Vitis vinifera |
transcript | Vv13s0019g03600.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAG GCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAGAGTAGCGAGTAGGAGEST: gi|32271533|gb|CD720692.1|CD720692
genomic: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGgtacatctgc ... cattctgcagGCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAG
EST: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAG GCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAGEST: gi|110690518|gb|EE067687.1|EE067687
genomic: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGgtacatctgc ... cattctgcagGCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAG
EST: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAG GCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAGAGTAGCGAGTAGGAGEST: gi|22014931|gb|BQ799965.1|BQ799965
genomic: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGgtacatctgc ... cattctgcagGCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAG
EST: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAG GCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAGAGTAGCGAGTAGGAGEST: gi|110425488|gb|EC991873.1|EC991873
genomic: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGgtacatctgc ... cattctgcagGCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAG
EST: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAG GCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAGEST: gi|22013467|gb|BQ798501.1|BQ798501
genomic: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGgtacatctgc ... cattctgcagGCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAG
EST: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAG GCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAGAGTAGCGAGTAGGAG
genomic: TTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGgtacatctgc ... cattctgcagGCACAGGGGCAGCATCTAATTGTATCTCCCGTGCAAAGTAGCGAGTAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCTCATCAGGGGTCCTTTACGCAAGCAATGAACTATATGAATTCCCAGgtacatctgcgcgtgtgtgcatatgtgctgtctataacaaagaaaagatatgatcgctaactgacagttaggatataattttgcttgtgatatcgaatta
- - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa