1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAGgtaaatttttccacctcaattcataattttaaagttgtgatgaccattgaacctaacgtgggtggttgggagtcggtcattacaaatggtatgacatagg...
species | Vitis vinifera |
transcript | Vv12s0059g02280.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAG GCAAGAGCATACGCTAAGGCCCTAAATGCGACGCTCTTCTTCTCGAGCGCAEST: gi|110383289|gb|EC947654.1|EC947654
genomic: ACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAGgtaaattttt ... tttttggcagGCAAGAGCGTACGCTAAGGCCCTAAATGCAACGCTCTTCTTCTCGAGCGCA
EST: ACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAG GCAAGAGCATACGCTAAGGCCCTAAATGCGACGCTCTTCTTCTCGAGCGCAEST: gi|34544942|gb|CF513174.1|CF513174
genomic: ACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAGgtaaattttt ... tttttggcagGCAAGAGCGTACGCTAAGGCCCTAAATGCAACGCTCTTCTTCTCGAGCGCA
EST: ACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAG GCAAGAGCATACGCTAAGGCCCTAAATGCGACGCTCTTCTTCTCGAGCGCA
genomic: ACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAGgtaaattttt ... tttttggcagGCAAGAGCGTACGCTAAGGCCCTAAATGCAACGCTCTTCTTCTCGAGCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAGgtaaatttttccacctcaattcataattttaaagttgtgatgaccattgaacctaacgtgggtggttgggagtcggtcattacaaatggtatgacatagg
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