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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctcttctaaattgttctccactcctcaatctattatttataatttatccacatgcttctatagaatggtttttttttaaagttgtgcttctaacacaaggctcaaatgtag

Basic information

species Vitis vinifera
transcript Vv12s0057g01240.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351046192|gb|FQ442570.1|FQ442570
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCA
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCA
EST: gi|110421432|gb|EC987728.1|EC987728
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
EST: gi|110687718|gb|EE065446.1|EE065446
EST:     GGAAGCTTTGTAAATCTGGAGTTGATACGAAATGCCGGAAGTAA-G                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACT
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGA-GTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACT
EST: gi|352795534|gb|FQ480122.1|FQ480122
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTC
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTC
EST: gi|110697753|gb|EE075019.1|EE075019
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCCACTAT
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
EST: gi|351053257|gb|FQ459125.1|FQ459125
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGT
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGT
EST: gi|110691072|gb|EE068758.1|EE068758
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
EST: gi|352798538|gb|FQ480563.1|FQ480563
EST:     GGAAGCTTTGAAAATCTGGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTAAATGCATGGCAAATCTACTAT
genomic: GGAAGCTTTGAAAATCTGG-AGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
EST: gi|351046111|gb|FQ442489.1|FQ442489
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACAAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAG
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAG
EST: gi|110724707|gb|EE100769.1|EE100769
EST:     GGAAAGCTT-GAAAATCTGGGAGT-GATACGAAATGCCCGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTAAATGCATGGCAAATCTACTAT
genomic: GGAA-GCTTTGAAAATCTGG-AGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
EST: gi|110709662|gb|EE085318.1|EE085318
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTA
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTA
EST: gi|161713572|gb|FC063401.1|FC063401
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTAGATGCATGGCAAATCTACTAT
EST: gi|351036912|gb|FQ459434.1|FQ459434
EST:     GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAG                         TGCCCTCTGCTGTGCAAAGAATTTGTCGTA
genomic: GGAAGCTTTGAAAATCTGGAGTTGATACGAAATGCCGGAGTAAAGgtctgctctt ... tcaaatgtagTGCCCTCTGCTGTGCAAAGAATTTGTCGTA