Sequence
atgc intronic sequence ATGC exonic sequenceTTCCTCAGAGAAGCTTCTCCCAGATTTGCATCCCCTGGAGCAACATATATTCACTCTTGTTTTGGATCTGAATGAGACTTTACTATACTCTGATTGGAAGgtacattttctcttatttaaatagagttcattatttattgtcgtgttctgcaatgcctcacatctatcacacttttcgatatttgagtagctaatggagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g00900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g55700.1 (Oryza sativa), 5'ss of exon 5
TTCCTCAGAGAAGCTTCTCCCAGATTTGCATCCCCTGGAGCAACATATATTCACTCTTGTTTTGGATCTGAATGAGACTTTACTATACTCTGATTGGAAGgtacattttctcttatttaaatagagttcattatttattgtcgtgttctgcaatgcctcacatctatcacacttttcgat---atttgagtagctaatggagt-
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ATCATCAGATAAACTTCTTCCGGATCTACTTCCTCAAGAGCAGCATGTCTTCACCCTAGTTCTGGATCTGAATGAGACTCTTGTATACTCAGATTGGAAGgtgaacatttatgt-tttctacgaagttacttatcttggtatttgatatgtagtcctt---atgtagtatacaatatgacccaatcctaacagttacgcaaact
upper sequence: Vv12s0057g00900.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G896568_T01 (Zea mays), 5'ss of exon 5
TTCCTCAGAGAAGCTTCTCCCAGATTTGCATCCCCTGGAGCAACATATATTCACTCTTGTTTTGGATCTGAATGAGACTTTACTATACTCTGATTGGAAGgtacattttctcttatttaaatagagttcattatttattgtcgtgttctgca-atgcctcacatc-tatcacact-tttcgatatttgagtagctaatggagt
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AGTATCAGACAAACTTCTTCCAGATCTTGCTCCTCAAGAGCAGCATGTATTGACTCTAGTTCTGGATCTGAACGAGACTCTTGTATACTCAGATTGGAAGgtgaacttttattt-tccatacaaacttt-cagttttttgtctactacggagtatgtatctctttatactgcattattgcgacatg-aactaaactgtaatgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110420227|gb|EC986492.1|EC986492EST: TTTTGGATCTGAATGAGACTTTACTATACTCTGATT-GAAG CGTGAAAGAGGTTGGCGAACGTTCAAAAGACCTGGAGTGGATGCTTTCTTG
genomic: TTTTGGATCTGAATGAGACTTTACTATACTCTGATTGGAAGgtacattttc ... tgctgcatagCGTGAAAGAGGTTGGCGAACGTTCAAAAGACCTGGAGTGGATGCTTTCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCCTCAGAGAAGCTTCTCCCAGATTTGCATCCCCTGGAGCAACATATATTCACTCTTGTTTTGGATCTGAATGAGACTTTACTATACTCTGATTGGAAGgtacattttctcttatttaaatagagttcattatttattgtcgtgttctgcaatgcctcacatctatcacacttttcgatatttgagtagctaatggagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataga