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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCAGGAGTATGGGGAAATGAAGgttgttcatttgtaacaacattgcttcattcaacaatttagttgatataattgaacatgcatatgctcagattcagaagaagcttagtttatgaggaaatcatttttcag

Basic information

species Vitis vinifera
transcript Vv12s0028g01100.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26265252|gb|CA816315.1|CA816315
EST:     TGGCCAGGAGTATGGGGAAATGAAG                         GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: gi|110730925|gb|EE108561.1|EE108561
EST:     TGGCCAGGAGTATGGGGAAATGAAN                         GGTATATTGATGGTCTTGGAGATGCAATGGAGATGGGCCTTGTGAAGGCTG
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: gi|110381894|gb|EC937946.1|EC937946
EST:     TGGCCAGGAGTATGGGGAAATGAAG                         GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: gi|26263992|gb|CA815055.1|CA815055
EST:     TGGCCAGGAGTATGGGGAAATGAAG                         GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: gi|110720549|gb|EE096568.1|EE096568
EST:     TGGCCAGGAGTATGGGGAAATGAAG                         GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
EST: gi|110370834|gb|EC934386.1|EC934386
EST:     TGGCCAGGAGTATGGGGAAATGAAG                         GGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG
genomic: TGGCCAGGAGTATGGGGAAATGAAGgttgttcatt ... catttttcagGGTATATTGATGGTCTTGGAGATGCAGTGGAGATGGGCCTTGTGAAGGCTG