Sequence
atgc intronic sequence ATGC exonic sequenceGGCTCCGCGACTGCTACAGTCCATGTTTTGTGCAGTTGGTGATTTATACTTGTACAAGCTGTCTAATGTCCTATTTGATGATCATGTTGCACAATGGGCGgtatccttttataatgtgttctttgcagcttgtaattttatgaattttatgtatcaatttttgttttcccatgttggaagctctcttcttatgattgttaccagagaaaaactactttagaaatcattacattcattgaagatggtatacttaattctatggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g01100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G01500.1 (Glycine max), 5'ss of exon 3
GGCTCCGCGACTGCTACAGTCCATGTTTTGTGCAGTTGGTGATTTATACTTGTACAAGCTGTCTAATGTCCTATTTGATGATCATGTTGCACAATGGGCGgtatccttttataatgtgttctttgcagcttgtaattttatgaattttatgtatcaatttttgttttcccatgttggaagctct--cttcttatgattgttaccagagaaaaactactttagaaatcattacattcattgaagatggtatacttaattctatggcag
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GGCTCCACGGCTACTGCAGTCTGTATTCTCTGCAGTTGGTGATTTATACTTGTACAAGCTTGCTGCGGTTCTCTTTGGTGATTCTGTTGCAAAATGGACAgtatcctacgattctgtttacctttc--tttcttcttcttt----tttttgttggaatgagtgtgttta-atgtttgaagttcttgctgctttgcattctccgatattgtatatgaaaattgaaaactttactctgtctcag-------------------------
upper sequence: Vv11s0037g01100.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G07620.1 (Glycine max), 5'ss of exon 3
-----GGCTCCGCGACTGCTACAGTCCATGTTTTGTGCAGTTGGTGATTTATACTTGTACAAGCTGTCTAATGTCCTATTTGATGATCATGTTGCACAATGGGCGgtatccttttataatgtgttctttgcagcttgtaattttatgaattttatgtatcaatttttgttttcccatgttggaagctctcttcttatgattgttaccagagaaaaactactttagaaatcattacattcattgaagatggtatacttaattctatggcag
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ATGAGGGCTCCACGGCTACTGCAATCTGTATTCTCTGCAGTTGGTGATTTATACTTGTACAAGCTTTCTGCGGTTCTCTTTGgttactctgttgcaaaatggacagtatcctacgattttgtttacctttt--ctttttgttggaatgagtgtgt---ttaatgtttgatgttct-tgctgcttttcattctccgat-attgtgtatgaagattgaaaacttaactctttctcag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161715424|gb|FC068733.1|FC068733EST: TGTACAAGCTGTCTAATGTCCTATTTGATGATCATGTTGCACAATGGGCG CTTTTTTCACAGTTGGTGAACTGGTTTATGTTTTTCTGTTTCACTCGTACA
genomic: TGTACAAGCTGTCTAATGTCCTATTTGATGATCATGTTGCACAATGGGCGgtatcctttt ... tctatggcagCTTTTTTCACAGTTGGTGAACTGGTTTATGTTTTTCTGTTTCACTCGTACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTCCGCGACTGCTACAGTCCATGTTTTGTGCAGTTGGTGATTTATACTTGTACAAGCTGTCTAATGTCCTATTTGATGATCATGTTGCACAATGGGCGgtatccttttataatgtgttctttgcagcttgtaattttatgaattttatgtatcaatttttgttttcccatgttggaagctctcttcttatgattgttaccagagaaaaactactttagaaatcattacattcattgaagatggtatacttaattctatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG