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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtcttgaaatgccttatttccttgttacttggacacatgtttttttctttggtatttcttcttatactttgtcagcattcttgtgttatgctcatcag

Basic information

species Vitis vinifera
transcript Vv11s0016g03460.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32265262|gb|CD716851.1|CD716851
EST:     CTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: CTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71859743|gb|DT008798.1|DT008798
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGATATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71857582|gb|DT006637.1|DT006637
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGATATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71859339|gb|DT008394.1|DT008394
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGATATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71864348|gb|DT013403.1|DT013403
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGC
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGC
EST: gi|71859319|gb|DT008374.1|DT008374
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGATATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71864880|gb|DT013935.1|DT013935
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTGTCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|32250210|gb|CD716029.1|CD716029
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71858976|gb|DT008031.1|DT008031
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGATATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71860850|gb|DT009905.1|DT009905
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71863788|gb|DT012843.1|DT012843
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71863133|gb|DT012188.1|DT012188
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|110373710|gb|EC938001.1|EC938001
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGATATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71863496|gb|DT012551.1|DT012551
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71873064|gb|DT022119.1|DT022119
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGATATCGGTACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|294965830|gb|GW837313.1|GW837313
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|110702369|gb|EE081005.1|EE081005
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|352781444|gb|FQ468288.1|FQ468288
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|71861658|gb|DT010713.1|DT010713
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGG
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGG
EST: gi|27580104|gb|CB002799.1|CB002799
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|352768395|gb|FQ469571.1|FQ469571
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA
EST: gi|110710321|gb|EE086552.1|EE086552
EST:     ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAG                         GTTTACATTATAGATTTTGGGCTTGCTAAAAGATATCGGGACTCTACAACA
genomic: ATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtctt ... tgctcatcagGTTTACATTATAGATTTTGGGCTTGCTAAAAGGTATCGGGACTCTACAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTACAAGAATCGAATATGTGCACTCTAAAGGATTTTTACATAGAGATATCAAGCCCGACAACTTCCTCATGGGTCTGGGTCGTAAAGCAAATCAGgtgacgtcttgaaatgccttatttccttgttacttggacacatgtttttttctttggtatttcttcttatactttgtcagcattcttgtgttatgctcatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA