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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCTGTGAATACGAGAACGCCGTTTGCTGCACTGGAACAGAGTACTGCTGCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatgactatcccatcagtgtttctgcttttgttcttgggaacgttataattcaccttatctgtttgtatgttttttgtattacag

Basic information

species Vitis vinifera
transcript Vv10s0003g01360.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715810|gb|EE094283.1|EE094283
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110693713|gb|EE070195.1|EE070195
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110730550|gb|EE107754.1|EE107754
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|71882894|gb|DT031949.1|DT031949
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCTTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110377337|gb|EC942400.1|EC942400
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|22011586|gb|BQ796620.1|BQ796620
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110425953|gb|EC992349.1|EC992349
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110395947|gb|EC961621.1|EC961621
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110717108|gb|EE092686.1|EE092686
EST:     GGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110428399|gb|EC994869.1|EC994869
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|71888867|gb|DT037922.1|DT037922
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCTTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110714931|gb|EE092404.1|EE092404
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|22008795|gb|BQ793829.1|BQ793829
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCTTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|27581997|gb|CB004692.1|CB004692
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|46918239|gb|CN547568.1|CN547568
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|30325954|gb|CD009216.1|CD009216
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110716212|gb|EE091006.1|EE091006
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|32460811|gb|CD801985.1|CD801985
EST:     CCCAGTGACTACCCCATTTTTGCGATGTGGAAGAAGGCTTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: CCCAGTGACTACCCCA--TTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110419921|gb|EC986177.1|EC986177
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|22011578|gb|BQ796612.1|BQ796612
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
EST: gi|110411329|gb|EC977038.1|EC977038
EST:     GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAG                         AACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG
genomic: GCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatga ... tgtattacagAACCAGGGAGACTACCTAGGAGTAGCAGCAAAGAAGAGAAAGATGGCGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGCTGTGAATACGAGAACGCCGTTTGCTGCACTGGAACAGAGTACTGCTGCCCCAGTGACTACCCCATTTGCGATGTGGAAGAAGGCCTATGTCTCAAGgtatatatgactatcccatcagtgtttctgcttttgttcttgggaacgttataattcaccttatctgtttgtatgttttttgtattacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG