1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACTGGAAAGGAAGAGGAAATCAATCTCTTGGGTGATGAGACTGCAAAAGCTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaacttaacaccatcattccatactagtattaaaattatcaatattttcatatttttcttccactttttgtacag
species | Vitis vinifera |
transcript | Vv08s0056g00030.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|30128721|gb|CB914060.1|CB914060
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|32247573|gb|CD713392.1|CD713392
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|30322778|gb|CD006040.1|CD006040
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|27582778|gb|CB005473.1|CB005473
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|110703134|gb|EE079712.1|EE079712
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|351033064|gb|FQ446417.1|FQ446417
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|110702464|gb|EE081204.1|EE081204
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|351026488|gb|FQ428500.1|FQ428500
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|34361910|gb|CF403495.1|CF403495
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|77584900|gb|DV221533.1|DV221533
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|27582290|gb|CB004985.1|CB004985
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|71870980|gb|DT020035.1|DT020035
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|30303216|gb|CB980010.1|CB980010
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|110382971|gb|EC947304.1|EC947304
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|18458074|gb|BM436352.1|BM436352
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCTEST: gi|71867829|gb|DT016884.1|DT016884
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
EST: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTT GCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
genomic: CTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaa ... ttttgtacagGCTGTGGATTTCAAGAAGCCTGTTTACAGAGAAGTTTTGACAGTTTTTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTGGAAAGGAAGAGGAAATCAATCTCTTGGGTGATGAGACTGCAAAAGCTGAGTTTGGCGAGTGGTCATGGATGTCACCGGATCAAGTAGTTGAGCTTgtgggtagaacttaacaccatcattccatactagtattaaaattatcaatattttcatatttttcttccactttttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT