Sequence
atgc intronic sequence ATGC exonic sequenceATTAGCAGTCGTAATTTGGATCGGGTTCGTAAATTGAAGAGTGCCATGACAAGGTTGACCAATCGGGTTCAGAAGgcatgtttatatctctaacacactaatatttttctcaattttgggctggattcctttctttcagtattaaattacaattatatacttatatgggatccaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0141g00590.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA03G31600.1 (Glycine max), 5'ss of exon 5
ATTAGCAGTCGTAATTTGGATCGGGTTCGTAAATTGAAGAGTGCCATGACAAGGTTGACCAATCGGGTTCAGAAGgcatgtttatatctctaacacactaatatttttctcaattttgggctggattcctttctttcagtattaaattacaattatatacttatatgggatccaa-----
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ATCAGCAGTCGTAATTTGGATAGAGTGCGAAAATTGAAATGTGCAATGACGAGGTTGACAATTCGAGTTCAAAAGgtatgtttaaatagcaaatagattt---tttaacacaattttattccc--ttccctctcacaagtgaattccccctttttcttttttcttttttttttaacgtgt
upper sequence: Vv07s0141g00590.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S76_98V6.2 (Physcomitrella patens), 5'ss of exon 6
ATTAGCAGTCGTAATTTGGATCGGGTTCGTAAATTGAAGAGTGCCATGACAAGGTTGACCAATCGGGTTCAGAAGgcatgtttatatctctaacacactaatatttttctcaattttgggctggattcctttctttcagtattaaattacaattatatacttatatgggatccaa-------
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ATTAGTAGTCGTAATTTGGACCGCGTACGTAAGTTGAAGAGTAGCATGACAAGGCTTAATGCCCGAGTTCAGAAGgtactctgctttcaaatccttcctagatgtatgtgcaaatttcatc----atccaaattgcaaggatgaaat---agctttaggcttctctaaaaccttttcttcgcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110687914|gb|EE065866.1|EE065866EST: TTCGTAAATTAAAGAGTGCCATGACAAGGTTGACCAATCGGGTTCAGAAG GTAAGAGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCAGAC
genomic: TTCGTAAATTGAAGAGTGCCATGACAAGGTTGACCAATCGGGTTCAGAAGgcatgtttat ... ttggttccagGTAAGAGATGAGCTTGAACAACTTCTGGATGATGATGATGATATGGCAGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTAGCAGTCGTAATTTGGATCGGGTTCGTAAATTGAAGAGTGCCATGACAAGGTTGACCAATCGGGTTCAGAAGgcatgtttatatctctaacacactaatatttttctcaattttgggctggattcctttctttcagtattaaattacaattatatacttatatgggatccaa
- - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - TGAAGA